Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30568
(723 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC101022-1|AAI01023.1| 571|Homo sapiens THSD3 protein protein. 31 4.2
BC101020-1|AAI01021.1| 571|Homo sapiens THSD3 protein protein. 31 4.2
BC101019-1|AAI01020.1| 571|Homo sapiens THSD3 protein protein. 31 4.2
BC033140-1|AAH33140.1| 518|Homo sapiens THSD3 protein protein. 31 4.2
AJ583024-1|CAE47313.1| 571|Homo sapiens thrombospondin and AMOP... 31 4.2
AF111168-4|AAD09622.1| 658|Homo sapiens unknown protein. 31 4.2
BC022561-1|AAH22561.1| 396|Homo sapiens DENN/MADD domain contai... 31 5.5
AB065777-1|BAC05997.1| 318|Homo sapiens seven transmembrane hel... 31 5.5
>BC101022-1|AAI01023.1| 571|Homo sapiens THSD3 protein protein.
Length = 571
Score = 31.1 bits (67), Expect = 4.2
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +2
Query: 44 VFSFLWASLTSISNDKAPRNILVERGRLE-LPGPVLEAAGSQDWCSDTRERTARWYRKVE 220
++SFLW D+AP E+ E P +E +D D E+ A W+
Sbjct: 245 LWSFLWGDYKGEEKDRAPGEKGEEKEEDEDYPSEDIEGEDQEDKEEDEEEQ-ALWFNGTT 303
Query: 221 EQIVRQRS*VAPGIPATLNYIPLDAPYEPSPKLTPYPSFEGNELGNCQTG 370
+ + +APG + + D YEP + +P+ GNC TG
Sbjct: 304 DN--WDQGWLAPGDWVFKDSVSYD--YEPQKEWSPWSPCS----GNCSTG 345
>BC101020-1|AAI01021.1| 571|Homo sapiens THSD3 protein protein.
Length = 571
Score = 31.1 bits (67), Expect = 4.2
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +2
Query: 44 VFSFLWASLTSISNDKAPRNILVERGRLE-LPGPVLEAAGSQDWCSDTRERTARWYRKVE 220
++SFLW D+AP E+ E P +E +D D E+ A W+
Sbjct: 245 LWSFLWGDYKGEEKDRAPGEKGEEKEEDEDYPSEDIEGEDQEDKEEDEEEQ-ALWFNGTT 303
Query: 221 EQIVRQRS*VAPGIPATLNYIPLDAPYEPSPKLTPYPSFEGNELGNCQTG 370
+ + +APG + + D YEP + +P+ GNC TG
Sbjct: 304 DN--WDQGWLAPGDWVFKDSVSYD--YEPQKEWSPWSPCS----GNCSTG 345
>BC101019-1|AAI01020.1| 571|Homo sapiens THSD3 protein protein.
Length = 571
Score = 31.1 bits (67), Expect = 4.2
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +2
Query: 44 VFSFLWASLTSISNDKAPRNILVERGRLE-LPGPVLEAAGSQDWCSDTRERTARWYRKVE 220
++SFLW D+AP E+ E P +E +D D E+ A W+
Sbjct: 245 LWSFLWGDYKGEEKDRAPGEKGEEKEEDEDYPSEDIEGEDQEDKEEDEEEQ-ALWFNGTT 303
Query: 221 EQIVRQRS*VAPGIPATLNYIPLDAPYEPSPKLTPYPSFEGNELGNCQTG 370
+ + +APG + + D YEP + +P+ GNC TG
Sbjct: 304 DN--WDQGWLAPGDWVFKDSVSYD--YEPQKEWSPWSPCS----GNCSTG 345
>BC033140-1|AAH33140.1| 518|Homo sapiens THSD3 protein protein.
Length = 518
Score = 31.1 bits (67), Expect = 4.2
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +2
Query: 44 VFSFLWASLTSISNDKAPRNILVERGRLE-LPGPVLEAAGSQDWCSDTRERTARWYRKVE 220
++SFLW D+AP E+ E P +E +D D E+ A W+
Sbjct: 192 LWSFLWGDYKGEEKDRAPGEKGEEKEEDEDYPSEDIEGEDQEDKEEDEEEQ-ALWFNGTT 250
Query: 221 EQIVRQRS*VAPGIPATLNYIPLDAPYEPSPKLTPYPSFEGNELGNCQTG 370
+ + +APG + + D YEP + +P+ GNC TG
Sbjct: 251 DN--WDQGWLAPGDWVFKDSVSYD--YEPQKEWSPWSPCS----GNCSTG 292
>AJ583024-1|CAE47313.1| 571|Homo sapiens thrombospondin and AMOP
containing isthmin-like 1 protein.
Length = 571
Score = 31.1 bits (67), Expect = 4.2
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +2
Query: 44 VFSFLWASLTSISNDKAPRNILVERGRLE-LPGPVLEAAGSQDWCSDTRERTARWYRKVE 220
++SFLW D+AP E+ E P +E +D D E+ A W+
Sbjct: 245 LWSFLWGDYKGEEKDRAPGEKGEEKEEDEDYPSEDIEGEDQEDKEEDEEEQ-ALWFNGTT 303
Query: 221 EQIVRQRS*VAPGIPATLNYIPLDAPYEPSPKLTPYPSFEGNELGNCQTG 370
+ + +APG + + D YEP + +P+ GNC TG
Sbjct: 304 DN--WDQGWLAPGDWVFKDSVSYD--YEPQKEWSPWSPCS----GNCSTG 345
>AF111168-4|AAD09622.1| 658|Homo sapiens unknown protein.
Length = 658
Score = 31.1 bits (67), Expect = 4.2
Identities = 29/110 (26%), Positives = 45/110 (40%), Gaps = 1/110 (0%)
Frame = +2
Query: 44 VFSFLWASLTSISNDKAPRNILVERGRLE-LPGPVLEAAGSQDWCSDTRERTARWYRKVE 220
++SFLW D+AP E+ E P +E +D D E+ A W+
Sbjct: 332 LWSFLWGDYKGEEKDRAPGEKGEEKEEDEDYPSEDIEGEDQEDKEEDEEEQ-ALWFNGTT 390
Query: 221 EQIVRQRS*VAPGIPATLNYIPLDAPYEPSPKLTPYPSFEGNELGNCQTG 370
+ + +APG + + D YEP + +P+ GNC TG
Sbjct: 391 DN--WDQGWLAPGDWVFKDSVSYD--YEPQKEWSPWSPCS----GNCSTG 432
>BC022561-1|AAH22561.1| 396|Homo sapiens DENN/MADD domain
containing 1B protein.
Length = 396
Score = 30.7 bits (66), Expect = 5.5
Identities = 14/40 (35%), Positives = 23/40 (57%)
Frame = +3
Query: 96 QEIFSWNVVDWNYPDQFSKQQALRTGALIPENALPVGIER 215
Q +FS VV W +P+ F Q+ L++ +P+ P +ER
Sbjct: 13 QPVFSNPVVLWKFPEDFGDQEILQS---VPKFCFPFDVER 49
>AB065777-1|BAC05997.1| 318|Homo sapiens seven transmembrane helix
receptor protein.
Length = 318
Score = 30.7 bits (66), Expect = 5.5
Identities = 20/66 (30%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Frame = -3
Query: 538 CLLVVTRIY--GDLISVQVKYIERVRAHICNVVVSISANV*YPKTITLVCFDPVYSSQSC 365
C L+VT Y G L S+ + Y V ++ C + Y ++L C DP ++ +C
Sbjct: 145 CALLVTGTYTWGGLCSLTLTYSLLVLSY-CGSNIINHFGCEYSAILSLSCSDPYFNQMAC 203
Query: 364 LTIA*F 347
L I+ F
Sbjct: 204 LVISIF 209
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 114,271,985
Number of Sequences: 237096
Number of extensions: 2620156
Number of successful extensions: 5773
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5773
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -