Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30568
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical pr...    34   0.12 
AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical ...    34   0.12 
U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical pr...    31   0.63 
U28730-4|AAO38621.1|  228|Caenorhabditis elegans Hypothetical pr...    29   2.5  
U28730-3|AAO38622.1|  243|Caenorhabditis elegans Hypothetical pr...    29   2.5  
DQ340628-1|ABC65816.1|  228|Caenorhabditis elegans chondroitin p...    29   2.5  

>Z54238-8|CAA90998.3|  459|Caenorhabditis elegans Hypothetical
           protein T28C6.7 protein.
          Length = 459

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 21/68 (30%), Positives = 30/68 (44%)
 Frame = +2

Query: 140 PVLEAAGSQDWCSDTRERTARWYRKVEEQIVRQRS*VAPGIPATLNYIPLDAPYEPSPKL 319
           P L A  S    +   ER AR        ++ QR  +      T +  PLD P++PS KL
Sbjct: 90  PSLMAHSSVPLSNSKSERRAR--SSSPGHVIAQRKTMVSSSSGTFSPPPLDPPFDPSSKL 147

Query: 320 TPYPSFEG 343
           +  P  +G
Sbjct: 148 SALPDIDG 155


>AC006672-7|AAM98004.1|  668|Caenorhabditis elegans Hypothetical
           protein K08D12.6 protein.
          Length = 668

 Score = 33.9 bits (74), Expect = 0.12
 Identities = 25/82 (30%), Positives = 35/82 (42%)
 Frame = +2

Query: 89  KAPRNILVERGRLELPGPVLEAAGSQDWCSDTRERTARWYRKVEEQIVRQRS*VAPGIPA 268
           +AP +  VE+  + +P P   AA + D  S     T   YR        ++  V P  PA
Sbjct: 371 EAPADAPVEQAPVAVPAPAPTAAPAPDCGSAAPAATDSGYRSKRNAYGDEQ--VTPA-PA 427

Query: 269 TLNYIPLDAPYEPSPKLTPYPS 334
                P DAP E +P   P P+
Sbjct: 428 AAAEAPADAPVEQAPVAVPAPA 449


>U00064-1|AAD31935.1|  845|Caenorhabditis elegans Hypothetical
           protein ZC155.3 protein.
          Length = 845

 Score = 31.5 bits (68), Expect = 0.63
 Identities = 16/53 (30%), Positives = 25/53 (47%)
 Frame = +2

Query: 365 TGLTTVYRVKADQCDRLWVLDVGTYGYDNVTNVCPYTLNVFDLNTDQISVNTC 523
           T L   + V+  + D +W +  G YGY+N T+     +   D   DQ+   TC
Sbjct: 456 THLKNTWNVRIYEGDDVWAVLWGVYGYNNTTSTT--CVQTHDSARDQVMWTTC 506


>U28730-4|AAO38621.1|  228|Caenorhabditis elegans Hypothetical
           protein K10B2.3a protein.
          Length = 228

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 637 TISPSSSEKVGKRCPHSWYRYRERCW 560
           T+ PS +    + CP  W RY + C+
Sbjct: 68  TLQPSQTIDQSENCPEGWIRYSDSCY 93


>U28730-3|AAO38622.1|  243|Caenorhabditis elegans Hypothetical
           protein K10B2.3b protein.
          Length = 243

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 637 TISPSSSEKVGKRCPHSWYRYRERCW 560
           T+ PS +    + CP  W RY + C+
Sbjct: 68  TLQPSQTIDQSENCPEGWIRYSDSCY 93


>DQ340628-1|ABC65816.1|  228|Caenorhabditis elegans chondroitin
           proteoglycan-6 protein.
          Length = 228

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -3

Query: 637 TISPSSSEKVGKRCPHSWYRYRERCW 560
           T+ PS +    + CP  W RY + C+
Sbjct: 68  TLQPSQTIDQSENCPEGWIRYSDSCY 93


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,546,728
Number of Sequences: 27780
Number of extensions: 395931
Number of successful extensions: 1042
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 996
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1038
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)