Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30567
(719 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 80 4e-16
SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger protein|Schiz... 52 6e-08
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi... 49 8e-07
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 44 2e-05
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr... 30 0.29
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 30 0.38
SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering compo... 28 1.2
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII... 28 1.2
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 27 2.0
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 27 2.0
SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated memb... 27 3.6
SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family |Schizos... 26 4.7
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch... 26 6.2
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho... 25 8.2
SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces pom... 25 8.2
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 8.2
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|... 25 8.2
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 79.8 bits (188), Expect = 4e-16
Identities = 31/73 (42%), Positives = 40/73 (54%)
Frame = +3
Query: 255 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTC 434
H AR+C + CY CN TGH A EC + E +CY C GH+ R+CP C
Sbjct: 27 HQARECTK-GSICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAEC 85
Query: 435 YNCNKSGHISRNC 473
Y C + GHI+R+C
Sbjct: 86 YKCGRVGHIARDC 98
Score = 76.6 bits (180), Expect = 3e-15
Identities = 37/97 (38%), Positives = 49/97 (50%), Gaps = 13/97 (13%)
Frame = +3
Query: 255 HFARDCKE--EADRCYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGRES 419
H A +C E + CY C GH+ R+C SP+ CY C + GHIAR+C G++S
Sbjct: 46 HKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVGHIARDCRTNGQQS 105
Query: 420 --------ATQTCYNCNKSGHISRNCPDGTKTCYVCG 506
+ CY C GH +R+C G K CY CG
Sbjct: 106 GGRFGGHRSNMNCYACGSYGHQARDCTMGVK-CYSCG 141
Score = 74.5 bits (175), Expect = 1e-14
Identities = 35/78 (44%), Positives = 42/78 (53%), Gaps = 5/78 (6%)
Frame = +3
Query: 288 RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 467
RCY C GH AREC + CYNCN+TGH A C E +E +TCY C +GH+ R
Sbjct: 18 RCYNCGENGHQARECTKGS---ICYNCNQTGHKASECTEPQQE---KTCYACGTAGHLVR 71
Query: 468 NCPDGTK-----TCYVCG 506
+CP CY CG
Sbjct: 72 DCPSSPNPRQGAECYKCG 89
Score = 61.3 bits (142), Expect = 1e-10
Identities = 26/54 (48%), Positives = 31/54 (57%), Gaps = 2/54 (3%)
Frame = +3
Query: 351 PSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC--PDGTKTCYVCG 506
P CYNC + GH AR C +G CYNCN++GH + C P KTCY CG
Sbjct: 17 PRCYNCGENGHQARECTKG------SICYNCNQTGHKASECTEPQQEKTCYACG 64
Score = 58.8 bits (136), Expect = 7e-10
Identities = 26/61 (42%), Positives = 32/61 (52%)
Frame = +3
Query: 291 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 470
CY C GH AR+C CY+C K GH + C + S Q CY CN+ GHI+ N
Sbjct: 118 CYACGSYGHQARDCTMGV---KCYSCGKIGHRSFECQQA---SDGQLCYKCNQPGHIAVN 171
Query: 471 C 473
C
Sbjct: 172 C 172
Score = 56.0 bits (129), Expect = 5e-09
Identities = 24/48 (50%), Positives = 28/48 (58%)
Frame = +3
Query: 255 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC 398
H ARDC +CY C GH + EC Q+ D CY CN+ GHIA NC
Sbjct: 126 HQARDCTMGV-KCYSCGKIGHRSFECQQASDGQLCYKCNQPGHIAVNC 172
Score = 41.5 bits (93), Expect = 1e-04
Identities = 19/51 (37%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Frame = +1
Query: 106 SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRDS-GFNRQREKCFKCNRTG 255
S P + CYKC R GH AR+C G S G +R C+ C G
Sbjct: 75 SSPNPRQGAECYKCGRVGHIARDCRTNGQQSGGRFGGHRSNMNCYACGSYG 125
Score = 38.7 bits (86), Expect = 8e-04
Identities = 23/57 (40%), Positives = 29/57 (50%), Gaps = 15/57 (26%)
Frame = +1
Query: 130 SVCYKCNRTGHFARECTQ------------GGVVSRD---SGFNRQREKCFKCNRTG 255
S+CY CN+TGH A ECT+ G + RD S RQ +C+KC R G
Sbjct: 36 SICYNCNQTGHKASECTEPQQEKTCYACGTAGHLVRDCPSSPNPRQGAECYKCGRVG 92
Score = 35.5 bits (78), Expect = 0.008
Identities = 16/40 (40%), Positives = 20/40 (50%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
CY C GH ARECT+G + C+ CN+TG
Sbjct: 19 CYNCGENGHQARECTKGSI-------------CYNCNQTG 45
Score = 32.7 bits (71), Expect = 0.054
Identities = 20/54 (37%), Positives = 27/54 (50%), Gaps = 10/54 (18%)
Frame = +1
Query: 124 SSSVCYKCNRTGHFARECTQG------GVVSRDSGFNRQR----EKCFKCNRTG 255
S+ CY C GH AR+CT G G + S F Q+ + C+KCN+ G
Sbjct: 114 SNMNCYACGSYGHQARDCTMGVKCYSCGKIGHRS-FECQQASDGQLCYKCNQPG 166
Score = 31.9 bits (69), Expect = 0.095
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 118 AMSSSVCYKCNRTGHFARECT 180
A +CYKCN+ GH A CT
Sbjct: 153 ASDGQLCYKCNQPGHIAVNCT 173
Score = 31.5 bits (68), Expect = 0.13
Identities = 12/28 (42%), Positives = 14/28 (50%)
Frame = +3
Query: 249 HRHFARDCKEEADRCYRCNGTGHIAREC 332
HR F + CY+CN GHIA C
Sbjct: 145 HRSFECQQASDGQLCYKCNQPGHIAVNC 172
>SPAC683.02c ||SPAC694.01c|zf-CCHC type zinc finger
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 218
Score = 52.4 bits (120), Expect = 6e-08
Identities = 25/88 (28%), Positives = 41/88 (46%), Gaps = 2/88 (2%)
Frame = +3
Query: 249 HRHFARDCKEEADR-CYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEGGRESA 422
+R R + D+ C+ C GHI ++C ++ D S C+ C H C + G
Sbjct: 64 YRRLRRINQRNRDKFCFACRQQGHIVQDCPEAKDNVSICFRCGSKEHSLNACSKKGPLKF 123
Query: 423 TQTCYNCNKSGHISRNCPDGTKTCYVCG 506
+ C+ C+++GH+S C K Y G
Sbjct: 124 AK-CFICHENGHLSGQCEQNPKGLYPKG 150
Score = 33.9 bits (74), Expect = 0.023
Identities = 13/51 (25%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
Frame = +3
Query: 288 RCYRCNGTGHIARECAQSPD--EPS---CYNCNKTGHIARNCPEGGRESAT 425
+C+ C+ GH++ +C Q+P P C C+ H+A++C + ++ +
Sbjct: 125 KCFICHENGHLSGQCEQNPKGLYPKGGCCKFCSSVHHLAKDCDQVNKDDVS 175
Score = 31.9 bits (69), Expect = 0.095
Identities = 11/29 (37%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Frame = +3
Query: 432 CYNCNKSGHISRNCP---DGTKTCYVCGN 509
C+ C + GHI ++CP D C+ CG+
Sbjct: 79 CFACRQQGHIVQDCPEAKDNVSICFRCGS 107
Score = 26.6 bits (56), Expect = 3.6
Identities = 13/46 (28%), Positives = 21/46 (45%)
Frame = +1
Query: 130 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGTLRG 267
S+C++C H C++ G + + KCF C+ G L G
Sbjct: 100 SICFRCGSKEHSLNACSKKGPL--------KFAKCFICHENGHLSG 137
>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
Air1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 313
Score = 48.8 bits (111), Expect = 8e-07
Identities = 30/99 (30%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Frame = +3
Query: 228 EVLQVQPHRHFARDCKEEADRCYRCNGTGHIAREC----------------AQSPDEPSC 359
E V R+F D E+ C+ C G GHI+++C + P C
Sbjct: 69 EWADVSRGRYFGSD-PSESIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKC 127
Query: 360 YNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 476
NC GHIA C E R+ + C C+ H S CP
Sbjct: 128 MNCGLLGHIAARCSE-PRKRGPRVCRTCHTDTHTSSTCP 165
Score = 37.9 bits (84), Expect = 0.001
Identities = 20/51 (39%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +3
Query: 357 CYNCNKTGHIARNCPEGGRESATQTCYNCNK-SGHISRNCPDGTKTCYVCG 506
C+NC GHI+++CP C C HIS CP TK C CG
Sbjct: 89 CHNCKGNGHISKDCPH-------VLCTTCGAIDDHISVRCP-WTKKCMNCG 131
Score = 34.3 bits (75), Expect = 0.018
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +3
Query: 405 GGRESATQTCYNCNKSGHISRNCPDGTKTCYVCG 506
G S + C+NC +GHIS++CP C CG
Sbjct: 80 GSDPSESIVCHNCKGNGHISKDCPH--VLCTTCG 111
Score = 25.4 bits (53), Expect = 8.2
Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 6/49 (12%)
Frame = +1
Query: 127 SSVCYKCNRTGHFAREC------TQGGVVSRDSGFNRQREKCFKCNRTG 255
S VC+ C GH +++C T G + S +KC C G
Sbjct: 86 SIVCHNCKGNGHISKDCPHVLCTTCGAIDDHISVRCPWTKKCMNCGLLG 134
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 44.0 bits (99), Expect = 2e-05
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +3
Query: 357 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 476
C NC GH +CPE + C +C GHI+R+CP
Sbjct: 311 CQNCGNVGHRRFDCPERINHTMNIVCRHCGSIGHIARDCP 350
Score = 29.5 bits (63), Expect = 0.51
Identities = 15/40 (37%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Frame = +3
Query: 249 HRHFARDCKEEADR-----CYRCNGTGHIARECAQSPDEP 353
HR F DC E + C C GHIAR+C +P
Sbjct: 319 HRRF--DCPERINHTMNIVCRHCGSIGHIARDCPVRDQQP 356
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/23 (39%), Positives = 12/23 (52%)
Frame = +3
Query: 411 RESATQTCYNCNKSGHISRNCPD 479
R+ Q C NC GH +CP+
Sbjct: 304 RDDENQVCQNCGNVGHRRFDCPE 326
>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 506
Score = 30.3 bits (65), Expect = 0.29
Identities = 14/41 (34%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 393 NCPEGGRESATQTCYN----CNKSGHISRNCPDGTKTCYVC 503
+CP+G E T C+N C +G+IS P VC
Sbjct: 66 DCPDGSDEPGTSACHNGKFFCKNTGYISSYIPSNRVDDTVC 106
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 29.9 bits (64), Expect = 0.38
Identities = 15/58 (25%), Positives = 25/58 (43%), Gaps = 1/58 (1%)
Frame = +3
Query: 336 QSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCN-KSGHISRNCPDGTKTCYVCG 506
++ ++P+ N + N + T TC NC ++ + R PDG C CG
Sbjct: 603 KNAEKPTVSNAAEDKKGDANTRRANATNPTPTCTNCQTRTTPLWRRSPDGQPLCNACG 660
>SPAC17G6.08 |pep7|vac1|prevacuole/endosomal FYVE tethering
component Pep7 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 536
Score = 28.3 bits (60), Expect = 1.2
Identities = 16/55 (29%), Positives = 21/55 (38%)
Frame = -3
Query: 522 EMWPGCRTRSTSWCRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCN 358
++ P C T RR C CGR C + P P+ + C SCN
Sbjct: 279 QICPECNNSFTLTRRRRHCRLCGRVICRFCVLEISLPQHPQPLLI-----CMSCN 328
>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
complex subunit Taf111|Schizosaccharomyces pombe|chr
1|||Manual
Length = 979
Score = 28.3 bits (60), Expect = 1.2
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 2/25 (8%)
Frame = +3
Query: 408 GRESATQTCYNCNKSGHISRN--CP 476
GR+ T+ C NC + GH+ N CP
Sbjct: 939 GRKPTTRKCSNCGQVGHMKTNKICP 963
Score = 25.8 bits (54), Expect = 6.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 336 QSPDEPSCYNCNKTGHIARN--CPEGGR 413
+ P C NC + GH+ N CP GR
Sbjct: 940 RKPTTRKCSNCGQVGHMKTNKICPLFGR 967
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 130 SVCYKCNRTGHFAREC 177
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 255 HFARDCKEEADRCYRCNGTGHIAREC 332
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 27.5 bits (58), Expect = 2.0
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = +1
Query: 130 SVCYKCNRTGHFAREC 177
S CYKC + H REC
Sbjct: 1804 STCYKCGKADHNLREC 1819
Score = 27.1 bits (57), Expect = 2.7
Identities = 9/26 (34%), Positives = 11/26 (42%)
Frame = +3
Query: 255 HFARDCKEEADRCYRCNGTGHIAREC 332
H + C CY+C H REC
Sbjct: 1794 HTGKACPVRLSTCYKCGKADHNLREC 1819
>SPAC19A8.05c |vps27|sst4|sorting receptor for ubiquitinated
membrane proteins, ESCRT 0 complex|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 610
Score = 26.6 bits (56), Expect = 3.6
Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 1/63 (1%)
Frame = -3
Query: 507 CRTRSTSWCRRDSCGRCGRTCCSYSRSAS-QTPAPPRDSSVRCGPSCCSCNMTARPGSVR 331
CRT T R+ C CG C+ S + P + VR SC S + +P +
Sbjct: 179 CRTPFTFTNRKHHCRNCGGVFCNQCSSKTLSLPHLGINQPVRVCDSCYS--LRTKPKGSK 236
Query: 330 TRA 322
+RA
Sbjct: 237 SRA 239
>SPBP8B7.15c |||ubiquitin-protein ligase E3 RBBP6 family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 482
Score = 26.2 bits (55), Expect = 4.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 5/31 (16%)
Frame = +3
Query: 324 RECAQSPDEPS-----CYNCNKTGHIARNCP 401
R A PD+P CY C + GH + CP
Sbjct: 169 RIAASVPDKPPPPGYICYRCGQKGHWIQACP 199
Score = 25.4 bits (53), Expect = 8.2
Identities = 6/15 (40%), Positives = 11/15 (73%)
Frame = +1
Query: 133 VCYKCNRTGHFAREC 177
+CY+C + GH+ + C
Sbjct: 184 ICYRCGQKGHWIQAC 198
>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 297
Score = 25.8 bits (54), Expect = 6.2
Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Frame = -3
Query: 492 TSWC-RRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGSVRTRALC 316
+S C ++DS +CCS + + + P S CCS T+ +
Sbjct: 223 SSCCSKKDSSPSEKPSCCSQEKKSCCSSKKPSCCSQE-KKGCCSTEKTSCCSQEKKSCCT 281
Query: 315 AQCRYICSNGQPLPC 271
++ CSNG+ C
Sbjct: 282 SEKPSCCSNGKSTVC 296
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/54 (24%), Positives = 23/54 (42%)
Frame = -3
Query: 402 RDSSVRCGPSCCSCNMTARPGSVRTRALCAQCRYICSNGQPLPCNPSQSACAVA 241
+DSS PSCCS + S + + + CS + C+ + +C +
Sbjct: 229 KDSSPSEKPSCCSQEKKSCCSSKKPSCCSQEKKGCCSTEKTSCCSQEKKSCCTS 282
>SPBC3E7.01 |fab1|ste12,
SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 1932
Score = 25.4 bits (53), Expect = 8.2
Identities = 9/24 (37%), Positives = 12/24 (50%)
Frame = -3
Query: 507 CRTRSTSWCRRDSCGRCGRTCCSY 436
C T T + R+ C CG+ C Y
Sbjct: 69 CETEFTLFRRKHHCRICGKIICKY 92
>SPBC1734.11 |||DNAJ domain protein Mas5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.2
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +3
Query: 405 GGRESATQTCYNCNKSG 455
GG+E + ++C +CN SG
Sbjct: 144 GGKEGSVKSCASCNGSG 160
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 8.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Frame = -3
Query: 516 WPGCRTRSTSWCRRDSCGRCGRTCCS 439
+P C R + RR C RCG C+
Sbjct: 162 FPSCSVRFGLFDRRHHCRRCGDIFCA 187
>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 461
Score = 25.4 bits (53), Expect = 8.2
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = -3
Query: 441 SYSRSASQTPAPPRDSSVRCGPSCCSCN 358
+YS + T APP SS G SC +CN
Sbjct: 417 TYSPTTLSTNAPPSPSS---GRSCSNCN 441
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,630,876
Number of Sequences: 5004
Number of extensions: 50189
Number of successful extensions: 204
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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