Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30567
(719 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36020.1 68417.m05128 cold-shock DNA-binding family protein c... 73 2e-13
At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein... 67 1e-11
At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein... 66 3e-11
At2g17870.1 68415.m02070 cold-shock DNA-binding family protein c... 65 4e-11
At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein... 56 2e-08
At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein... 52 4e-07
At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein... 52 5e-07
At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly id... 50 2e-06
At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly id... 50 2e-06
At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly id... 50 2e-06
At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein... 50 2e-06
At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein... 48 6e-06
At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein... 48 6e-06
At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /... 47 1e-05
At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein... 40 0.002
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 38 0.005
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 38 0.007
At4g38680.1 68417.m05477 cold-shock DNA-binding family protein c... 38 0.009
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 36 0.036
At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein... 35 0.047
At3g26420.1 68416.m03295 glycine-rich RNA-binding protein simila... 34 0.082
At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein... 34 0.11
At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein... 33 0.14
At4g19130.1 68417.m02823 replication protein-related similar to ... 33 0.19
At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar ... 33 0.25
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 33 0.25
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 32 0.33
At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)... 32 0.44
At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein... 31 0.58
At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PS... 31 0.58
At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein... 31 0.58
At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein... 31 0.58
At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putat... 31 0.58
At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putat... 31 0.58
At3g31950.1 68416.m04046 hypothetical protein 31 0.77
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 31 1.0
At5g47430.1 68418.m05844 expressed protein 30 1.3
At5g47390.1 68418.m05840 myb family transcription factor contain... 30 1.3
At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein... 30 1.3
At4g39960.1 68417.m05660 DNAJ heat shock family protein similar ... 30 1.3
At4g17410.1 68417.m02607 expressed protein 30 1.3
At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein... 30 1.3
At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger) fa... 30 1.3
At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PS... 30 1.3
At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PS... 30 1.3
At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identic... 30 1.8
At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identic... 30 1.8
At3g16350.1 68416.m02068 myb family transcription factor ; conta... 30 1.8
At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein, pu... 30 1.8
At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative s... 29 2.3
At5g51300.2 68418.m06360 splicing factor-related contains simila... 29 2.3
At5g51300.1 68418.m06359 splicing factor-related contains simila... 29 2.3
At3g01620.1 68416.m00093 glycosyl transferase family 17 protein ... 29 2.3
At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains... 29 2.3
At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical ... 29 2.3
At5g61670.2 68418.m07738 expressed protein 29 3.1
At5g61670.1 68418.m07737 expressed protein 29 3.1
At4g06479.1 68417.m00885 hypothetical protein 29 3.1
At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak sim... 29 3.1
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 29 3.1
At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar ... 29 4.1
At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar ... 29 4.1
At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing ... 29 4.1
At2g38560.1 68415.m04737 transcription factor S-II (TFIIS) domai... 29 4.1
At4g30200.3 68417.m04295 expressed protein contains weak similar... 28 5.4
At4g30200.2 68417.m04294 expressed protein contains weak similar... 28 5.4
At4g30200.1 68417.m04293 expressed protein contains weak similar... 28 5.4
At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing ... 28 5.4
At4g06526.1 68417.m00938 hypothetical protein 28 7.2
At2g31850.1 68415.m03889 expressed protein 28 7.2
At2g22360.1 68415.m02653 DNAJ heat shock family protein similar ... 28 7.2
At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein... 27 9.5
At5g07270.1 68418.m00829 ankyrin repeat family protein contains ... 27 9.5
At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein... 27 9.5
At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical ... 27 9.5
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 27 9.5
>At4g36020.1 68417.m05128 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 299
Score = 72.9 bits (171), Expect = 2e-13
Identities = 36/89 (40%), Positives = 47/89 (52%), Gaps = 16/89 (17%)
Frame = +3
Query: 255 HFARDCKEE------------ADRCYRCNGTGHIARECAQSPDEPS--CYNCNKTGHIAR 392
HFARDC ++ + CY C G GHIAR+CA + +PS CY C +GH+AR
Sbjct: 208 HFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCA-TKRQPSRGCYQCGGSGHLAR 266
Query: 393 NCPEGGRESA--TQTCYNCNKSGHISRNC 473
+C + G CY C K GH +R C
Sbjct: 267 DCDQRGSGGGGNDNACYKCGKEGHFAREC 295
Score = 61.3 bits (142), Expect = 6e-10
Identities = 40/118 (33%), Positives = 50/118 (42%), Gaps = 34/118 (28%)
Frame = +3
Query: 255 HFARDC------------KEEADRCYRCNGTGHIARECAQSP------------DEPSCY 362
HFARDC K D CY C GH+AR+C Q CY
Sbjct: 142 HFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCY 201
Query: 363 NCNKTGHIARNCPE----GGRES---ATQTCYNCNKSGHISRNCP---DGTKTCYVCG 506
C GH AR+C + G S + TCY+C GHI+R+C ++ CY CG
Sbjct: 202 TCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKRQPSRGCYQCG 259
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/78 (35%), Positives = 38/78 (48%), Gaps = 17/78 (21%)
Frame = +3
Query: 291 CYRCNGTGHIARECA----------QSPDEPSCYNCNKTGHIARNCPEGG---RESATQ- 428
CY C GHI+++C +S CYNC TGH AR+C G + AT+
Sbjct: 102 CYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTGHFARDCTSAGNGDQRGATKG 161
Query: 429 ---TCYNCNKSGHISRNC 473
CY C GH++R+C
Sbjct: 162 GNDGCYTCGDVGHVARDC 179
Score = 54.8 bits (126), Expect = 5e-08
Identities = 31/103 (30%), Positives = 41/103 (39%), Gaps = 31/103 (30%)
Frame = +3
Query: 291 CYRCNGTGHIARECAQSPD----------EPSCYNCNKTGHIARNCPE---------GGR 413
CY C TGH AR+C + + CY C GH+AR+C + G
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVGHVARDCTQKSVGNGDQRGAV 193
Query: 414 ESATQTCYNCNKSGHISRNCPD------------GTKTCYVCG 506
+ CY C GH +R+C G+ TCY CG
Sbjct: 194 KGGNDGCYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCG 236
Score = 40.3 bits (90), Expect = 0.001
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
CY C TGHFAR+CT G + + C+ C G
Sbjct: 134 CYNCGDTGHFARDCTSAGNGDQRGATKGGNDGCYTCGDVG 173
Score = 37.5 bits (83), Expect = 0.009
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
CY+C +GH AR+C Q R SG C+KC + G
Sbjct: 255 CYQCGGSGHLARDCDQ-----RGSGGGGNDNACYKCGKEG 289
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/50 (36%), Positives = 21/50 (42%), Gaps = 1/50 (2%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGTL-RGIARKR 282
CY C GHFAR+CTQ C+ C G + R A KR
Sbjct: 200 CYTCGDVGHFARDCTQKVAAGNVRSGGGGSGTCYSCGGVGHIARDCATKR 249
Score = 36.7 bits (81), Expect = 0.015
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = +1
Query: 130 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
S CY C GH +++C GG +R E C+ C TG
Sbjct: 100 SGCYNCGELGHISKDCGIGGGGGGGERRSRGGEGCYNCGDTG 141
Score = 35.1 bits (77), Expect = 0.047
Identities = 11/19 (57%), Positives = 15/19 (78%)
Frame = +1
Query: 124 SSSVCYKCNRTGHFARECT 180
+ + CYKC + GHFAREC+
Sbjct: 278 NDNACYKCGKEGHFARECS 296
Score = 34.3 bits (75), Expect = 0.082
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRD--SGFNRQREKCFKCNRTG 255
CY C GH AR+CTQ V + D + C+ C G
Sbjct: 166 CYTCGDVGHVARDCTQKSVGNGDQRGAVKGGNDGCYTCGDVG 207
Score = 33.1 bits (72), Expect = 0.19
Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 7/34 (20%)
Frame = +3
Query: 255 HFARDCKEEA-------DRCYRCNGTGHIARECA 335
H ARDC + + CY+C GH AREC+
Sbjct: 263 HLARDCDQRGSGGGGNDNACYKCGKEGHFARECS 296
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/17 (58%), Positives = 13/17 (76%)
Frame = +3
Query: 432 CYNCNKSGHISRNCPDG 482
CYNC + GHIS++C G
Sbjct: 102 CYNCGELGHISKDCGIG 118
Score = 29.1 bits (62), Expect = 3.1
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGTL 261
S CY C GH AR+C SR C++C +G L
Sbjct: 229 SGTCYSCGGVGHIARDCATKRQPSRG---------CYQCGGSGHL 264
>At1g75560.1 68414.m08781 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 257
Score = 66.9 bits (156), Expect = 1e-11
Identities = 32/73 (43%), Positives = 39/73 (53%)
Frame = +3
Query: 255 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTC 434
HFARDC C C GHIA EC E C+NC + GH+A NC G C
Sbjct: 65 HFARDCSN-VSVCNNCGLPGHIAAECTA---ESRCWNCREPGHVASNCSNEG------IC 114
Query: 435 YNCNKSGHISRNC 473
++C KSGH +R+C
Sbjct: 115 HSCGKSGHRARDC 127
Score = 60.5 bits (140), Expect = 1e-09
Identities = 32/87 (36%), Positives = 45/87 (51%), Gaps = 4/87 (4%)
Frame = +3
Query: 255 HFARDCKEEADRCYRCNGTGHIARECAQSP----DEPSCYNCNKTGHIARNCPEGGRESA 422
H A +C E C+ C +GH AR+C+ S D C NC K GH+A +C +
Sbjct: 103 HVASNCSNEGI-CHSCGKSGHRARDCSNSDSRAGDLRLCNNCFKQGHLAADC------TN 155
Query: 423 TQTCYNCNKSGHISRNCPDGTKTCYVC 503
+ C NC SGHI+R+C + C +C
Sbjct: 156 DKACKNCRTSGHIARDCRN-DPVCNIC 181
Score = 57.6 bits (133), Expect = 8e-09
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 6/82 (7%)
Frame = +3
Query: 255 HFARDCKEEADR------CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE 416
H ARDC R C C GH+A +C ++ +C NC +GHIAR+C
Sbjct: 122 HRARDCSNSDSRAGDLRLCNNCFKQGHLAADCT---NDKACKNCRTSGHIARDCRN---- 174
Query: 417 SATQTCYNCNKSGHISRNCPDG 482
C C+ SGH++R+CP G
Sbjct: 175 --DPVCNICSISGHVARHCPKG 194
Score = 55.6 bits (128), Expect = 3e-08
Identities = 26/76 (34%), Positives = 37/76 (48%)
Frame = +3
Query: 279 EADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGH 458
+ + C C GH AR+C+ + C NC GHIA C +A C+NC + GH
Sbjct: 53 QGNLCNNCKRPGHFARDCS---NVSVCNNCGLPGHIAAEC------TAESRCWNCREPGH 103
Query: 459 ISRNCPDGTKTCYVCG 506
++ NC C+ CG
Sbjct: 104 VASNC-SNEGICHSCG 118
Score = 47.2 bits (107), Expect = 1e-05
Identities = 32/102 (31%), Positives = 45/102 (44%), Gaps = 28/102 (27%)
Frame = +3
Query: 255 HFARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----------- 401
H A DC + C C +GHIAR+C ++P C C+ +GH+AR+CP
Sbjct: 148 HLAADCTNDK-ACKNCRTSGHIARDCR---NDPVCNICSISGHVARHCPKGDSNYSDRGS 203
Query: 402 ---EGGRE--------------SATQTCYNCNKSGHISRNCP 476
+GG + SA C+NC GH + CP
Sbjct: 204 RVRDGGMQRGGLSRMSRDREGVSAMIICHNCGGRGHRAYECP 245
Score = 41.1 bits (92), Expect = 7e-04
Identities = 19/52 (36%), Positives = 25/52 (48%)
Frame = +3
Query: 357 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGNP 512
C NC + GH AR+C S C NC GHI+ C ++ C+ C P
Sbjct: 57 CNNCKRPGHFARDC------SNVSVCNNCGLPGHIAAECTAESR-CWNCREP 101
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +1
Query: 130 SVCYKCNRTGHFARECTQGGV 192
++C C R GHFAR+C+ V
Sbjct: 55 NLCNNCKRPGHFARDCSNVSV 75
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 124 SSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFK 240
+ +C+ C ++GH AR+C+ SR +G R CFK
Sbjct: 110 NEGICHSCGKSGHRARDCSNSD--SR-AGDLRLCNNCFK 145
>At5g52380.1 68418.m06499 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 268
Score = 65.7 bits (153), Expect = 3e-11
Identities = 32/95 (33%), Positives = 47/95 (49%), Gaps = 11/95 (11%)
Frame = +3
Query: 255 HFARDCKEEADR-----CYRCNGTGHIARECAQSPDEPS----CYNCNKTGHIARNCPEG 407
H A+ C E+++ C +C GH + C + +E S CYNC TGH +CP
Sbjct: 84 HIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEKNNESSEKKLCYNCGDTGHSLSHCPYP 143
Query: 408 GRESATQ--TCYNCNKSGHISRNCPDGTKTCYVCG 506
+ T+ +C+ C GHIS+NCP+ Y G
Sbjct: 144 MEDGGTKFASCFICKGQGHISKNCPENKHGIYPMG 178
Score = 51.6 bits (118), Expect = 5e-07
Identities = 25/75 (33%), Positives = 34/75 (45%), Gaps = 6/75 (8%)
Frame = +3
Query: 303 NGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 482
+ T H R P E C+ C+ HIA+ CPE + C C + GH +NCP+
Sbjct: 59 SSTRHPLRVPGMKPGE-GCFICHSKTHIAKLCPEKSEWERNKICLQCRRRGHSLKNCPEK 117
Query: 483 T------KTCYVCGN 509
K CY CG+
Sbjct: 118 NNESSEKKLCYNCGD 132
Score = 27.5 bits (58), Expect = 9.5
Identities = 10/43 (23%), Positives = 21/43 (48%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
+ +C +C R GH + C + + + +++ C+ C TG
Sbjct: 98 NKICLQCRRRGHSLKNCPE------KNNESSEKKLCYNCGDTG 134
>At2g17870.1 68415.m02070 cold-shock DNA-binding family protein
contains Pfam domains, PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 301
Score = 65.3 bits (152), Expect = 4e-11
Identities = 33/92 (35%), Positives = 43/92 (46%), Gaps = 19/92 (20%)
Frame = +3
Query: 255 HFARDCKEEA--------DRCYRCNGTGHIARECAQSPDEP------SCYNCNKTGHIAR 392
HFARDC++ CY C G GHIA+ C +CY C TGH+AR
Sbjct: 206 HFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGGGGGGRACYECGGTGHLAR 265
Query: 393 NCPEGGRESA-----TQTCYNCNKSGHISRNC 473
+C G S+ + C+ C K GH +R C
Sbjct: 266 DCDRRGSGSSGGGGGSNKCFICGKEGHFAREC 297
Score = 64.1 bits (149), Expect = 9e-11
Identities = 33/94 (35%), Positives = 45/94 (47%), Gaps = 20/94 (21%)
Frame = +3
Query: 285 DRCYRCNGTGHIARECAQS------PDEPSCYNCNKTGHIARNC----PEGGRESATQTC 434
D CY C G GH AR+C Q+ +CY C GHIA+ C P GG + C
Sbjct: 196 DGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCGGVGHIAKVCTSKIPSGG-GGGGRAC 254
Query: 435 YNCNKSGHISRNCP----------DGTKTCYVCG 506
Y C +GH++R+C G+ C++CG
Sbjct: 255 YECGGTGHLARDCDRRGSGSSGGGGGSNKCFICG 288
Score = 59.7 bits (138), Expect = 2e-09
Identities = 35/99 (35%), Positives = 43/99 (43%), Gaps = 27/99 (27%)
Frame = +3
Query: 291 CYRCNGTGHIARECAQSPDEPS---------CYNCNKTGHIARNC----------PEGGR 413
CY C GH AR+C QS S CY+C + GH+A++C GGR
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGRPCYSCGEVGHLAKDCRGGSGGNRYGGGGGR 191
Query: 414 ESATQTCYNCNKSGHISRNCPD--------GTKTCYVCG 506
S CY C GH +R+C G TCY CG
Sbjct: 192 GSGGDGCYMCGGVGHFARDCRQNGGGNVGGGGSTCYTCG 230
Score = 50.8 bits (116), Expect = 9e-07
Identities = 25/85 (29%), Positives = 40/85 (47%), Gaps = 20/85 (23%)
Frame = +3
Query: 291 CYRCNGTGHIAREC--------------AQSPDEPSCYNCNKTGHIARNCPE------GG 410
C+ C GH+A++C +S E CY C GH AR+C + GG
Sbjct: 96 CFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSGG 155
Query: 411 RESATQTCYNCNKSGHISRNCPDGT 485
+ CY+C + GH++++C G+
Sbjct: 156 GGGGGRPCYSCGEVGHLAKDCRGGS 180
Score = 40.7 bits (91), Expect = 0.001
Identities = 18/40 (45%), Positives = 22/40 (55%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
CY+C TGH AR+C + G S SG KCF C + G
Sbjct: 254 CYECGGTGHLARDCDRRG--SGSSGGGGGSNKCFICGKEG 291
Score = 39.5 bits (88), Expect = 0.002
Identities = 23/73 (31%), Positives = 33/73 (45%), Gaps = 22/73 (30%)
Frame = +3
Query: 354 SCYNCNKTGHIARNCP----------EGGRESATQ-TCYNCNKSGHISRNCPD------- 479
+C+NC + GH+A++C GGR S + CY C GH +R+C
Sbjct: 95 NCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVGHFARDCRQSGGGNSG 154
Query: 480 ----GTKTCYVCG 506
G + CY CG
Sbjct: 155 GGGGGGRPCYSCG 167
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/42 (40%), Positives = 20/42 (47%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGTL 261
CY C GHFAR+C Q G + G R C+ C G L
Sbjct: 132 CYMCGDVGHFARDCRQSGGGNSGGGGGGGR-PCYSCGEVGHL 172
Score = 34.7 bits (76), Expect = 0.062
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGTLRGIARKRL 285
CY C GHFAR+C Q G + G C+ C G + + ++
Sbjct: 198 CYMCGGVGHFARDCRQNGGGNVGGG----GSTCYTCGGVGHIAKVCTSKI 243
Score = 33.1 bits (72), Expect = 0.19
Identities = 17/44 (38%), Positives = 21/44 (47%)
Frame = +1
Query: 130 SVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTGTL 261
S CY C GH A+ CT + S G R C++C TG L
Sbjct: 224 STCYTCGGVGHIAKVCT-SKIPSGGGGGGR---ACYECGGTGHL 263
Score = 32.3 bits (70), Expect = 0.33
Identities = 11/18 (61%), Positives = 14/18 (77%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECT 180
S+ C+ C + GHFARECT
Sbjct: 281 SNKCFICGKEGHFARECT 298
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/43 (30%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSR---DSGFNRQREKCFKCNRTG 255
CY C GH A++C G +R G + C+ C G
Sbjct: 163 CYSCGEVGHLAKDCRGGSGGNRYGGGGGRGSGGDGCYMCGGVG 205
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 4/48 (8%)
Frame = +1
Query: 124 SSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQ---REKCFKCNRTG 255
S C+ C GH A++C G G S G R+ +C+ C G
Sbjct: 92 SGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGDVG 139
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +3
Query: 393 NCPEGGRESATQTCYNCNKSGHISRNCPDGT 485
N E + C+NC + GH++++C G+
Sbjct: 83 NKKENSSRGSGGNCFNCGEVGHMAKDCDGGS 113
>At3g43590.1 68416.m04638 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 551
Score = 56.0 bits (129), Expect = 2e-08
Identities = 32/91 (35%), Positives = 40/91 (43%), Gaps = 25/91 (27%)
Frame = +3
Query: 291 CYRCNGTGHIARECAQSPDEPS------------------CYNCNKTGHIARNCPEG--- 407
CYRC GH C + +E + CY C + GH AR CP
Sbjct: 287 CYRCGQLGHSGLACGRHYEESNENDSATPERLFNSREASECYRCGEEGHFARECPNSSSI 346
Query: 408 ----GRESATQTCYNCNKSGHISRNCPDGTK 488
GRES T CY CN SGH +R CP+ ++
Sbjct: 347 STSHGRESQT-LCYRCNGSGHFARECPNSSQ 376
Score = 52.8 bits (121), Expect = 2e-07
Identities = 32/88 (36%), Positives = 37/88 (42%), Gaps = 9/88 (10%)
Frame = +3
Query: 183 GGRGVAGFRFQSAT*EVLQVQPHRHFARDCKEEADRCYRCNGTGHIARECAQS------- 341
G G+A R + E P R F EA CYRC GH AREC S
Sbjct: 294 GHSGLACGRHYEESNENDSATPERLFN---SREASECYRCGEEGHFARECPNSSSISTSH 350
Query: 342 --PDEPSCYNCNKTGHIARNCPEGGRES 419
+ CY CN +GH AR CP + S
Sbjct: 351 GRESQTLCYRCNGSGHFARECPNSSQVS 378
Score = 48.8 bits (111), Expect = 4e-06
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 7/80 (8%)
Frame = +3
Query: 291 CYRCNGTGHIAREC-AQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISR 467
CY C GH + C + C+ C H A+ C +G CY C K+GH ++
Sbjct: 168 CYSCGEQGHTSFNCPTPTKRRKPCFICGSLEHGAKQCSKG------HDCYICKKTGHRAK 221
Query: 468 NCPD----GTK--TCYVCGN 509
+CPD G+K C CG+
Sbjct: 222 DCPDKYKNGSKGAVCLRCGD 241
Score = 48.0 bits (109), Expect = 6e-06
Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Frame = +3
Query: 291 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRE-SATQTCYNCNKSGH 458
C+ C H A++C++ D CY C KTGH A++CP+ + S C C GH
Sbjct: 191 CFICGSLEHGAKQCSKGHD---CYICKKTGHRAKDCPDKYKNGSKGAVCLRCGDFGH 244
Score = 44.8 bits (101), Expect = 6e-05
Identities = 17/43 (39%), Positives = 24/43 (55%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
+S CY+C GHFAREC +S G + C++CN +G
Sbjct: 324 ASECYRCGEEGHFARECPNSSSISTSHG-RESQTLCYRCNGSG 365
Score = 42.3 bits (95), Expect = 3e-04
Identities = 17/50 (34%), Positives = 26/50 (52%)
Frame = +3
Query: 354 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVC 503
SCY+C + GH + NCP + + C+ C H ++ C G CY+C
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKR--RKPCFICGSLEHGAKQCSKG-HDCYIC 213
Score = 40.3 bits (90), Expect = 0.001
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 1/43 (2%)
Frame = +1
Query: 124 SSSVCYKCNRTGHFARECTQGGVVS-RDSGFNRQREKCFKCNR 249
S ++CY+CN +GHFAREC VS RD + K K N+
Sbjct: 354 SQTLCYRCNGSGHFARECPNSSQVSKRDRETSTTSHKSRKKNK 396
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +3
Query: 429 TCYNCNKSGHISRNCPDGT---KTCYVCGN 509
+CY+C + GH S NCP T K C++CG+
Sbjct: 167 SCYSCGEQGHTSFNCPTPTKRRKPCFICGS 196
>At5g36240.1 68418.m04372 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 254
Score = 52.0 bits (119), Expect = 4e-07
Identities = 22/75 (29%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Frame = +3
Query: 288 RCYRCNGTGHIARECAQSPDEP-----SCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 452
+CY CN GH+ C P SCY C + GH C +S + +C+ C +
Sbjct: 54 KCYVCNSLGHL---CCIEPGHTQSWTVSCYRCGQLGHTGLACGRHYDDSVSPSCFICGRE 110
Query: 453 GHISRNCPDGTKTCY 497
GH C + C+
Sbjct: 111 GHFEHQCHNSFSVCF 125
Score = 51.2 bits (117), Expect = 7e-07
Identities = 29/88 (32%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Frame = +3
Query: 276 EEADRCYRCNGTGHIARECA-----QSPDEPSCYNCNKTGHIARNCPEGGR-ESATQTCY 437
+EA+ C RC G GH C + CY CN GH+ C E G +S T +CY
Sbjct: 23 DEAEVCLRCGGFGHDMTLCKYEYSHEDLKNIKCYVCNSLGHLC--CIEPGHTQSWTVSCY 80
Query: 438 NCNKSGHISRNC-----PDGTKTCYVCG 506
C + GH C + +C++CG
Sbjct: 81 RCGQLGHTGLACGRHYDDSVSPSCFICG 108
Score = 42.3 bits (95), Expect = 3e-04
Identities = 25/90 (27%), Positives = 34/90 (37%), Gaps = 21/90 (23%)
Frame = +3
Query: 291 CYRCNGTGHIARECAQSPDE---PSCYNCNKTGHIARNC--------PEGGRESATQTCY 437
CYRC GH C + D+ PSC+ C + GH C PE E Q
Sbjct: 79 CYRCGQLGHTGLACGRHYDDSVSPSCFICGREGHFEHQCHNSFSVCFPEDSSEDECQGPD 138
Query: 438 NCN----------KSGHISRNCPDGTKTCY 497
+ + + GH CPD + C+
Sbjct: 139 SSSVRFQENTREEEEGHFEHQCPDSSSVCF 168
Score = 35.9 bits (79), Expect = 0.027
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 6/65 (9%)
Frame = +3
Query: 312 GHIARECAQSPDEPS-CYN--CNKTGHIARNCPEGGRESATQT---CYNCNKSGHISRNC 473
GH +C PD S C+ + G I+ N +T CY C GHI+R+C
Sbjct: 154 GHFEHQC---PDSSSVCFQEISREEGFISLNSSSKSTSKGRETRRLCYECKGKGHIARDC 210
Query: 474 PDGTK 488
P+ ++
Sbjct: 211 PNSSQ 215
Score = 33.1 bits (72), Expect = 0.19
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +3
Query: 273 KEEADRCYRCNGTGHIARECAQS 341
+E CY C G GHIAR+C S
Sbjct: 191 RETRRLCYECKGKGHIARDCPNS 213
Score = 32.7 bits (71), Expect = 0.25
Identities = 22/84 (26%), Positives = 32/84 (38%), Gaps = 8/84 (9%)
Frame = +3
Query: 186 GRGVAGFRFQSAT*EVLQVQPHRHFARDCKEEADRCYR--CNGTGHIARECAQSPDEPS- 356
G + RFQ T E + HF C + + C++ G I+ +
Sbjct: 136 GPDSSSVRFQENTRE----EEEGHFEHQCPDSSSVCFQEISREEGFISLNSSSKSTSKGR 191
Query: 357 -----CYNCNKTGHIARNCPEGGR 413
CY C GHIAR+CP +
Sbjct: 192 ETRRLCYECKGKGHIARDCPNSSQ 215
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 76 YISVLSAQEFSKPIAMSSSVCYKCNRTGHFARECTQGGVV 195
+IS+ S+ + + + +CY+C GH AR+C V
Sbjct: 177 FISLNSSSKSTSKGRETRRLCYECKGKGHIARDCPNSSQV 216
>At3g42860.1 68416.m04491 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 372
Score = 51.6 bits (118), Expect = 5e-07
Identities = 37/115 (32%), Positives = 54/115 (46%), Gaps = 36/115 (31%)
Frame = +3
Query: 255 HFARDCKEEADR-----------CYRCNGTGHIAREC-AQSPD---EPS----------C 359
H+ARDC ++D C++C GH +R+C AQS + EP C
Sbjct: 247 HWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGEC 306
Query: 360 YNCNKTGHIARNCP--------EGGRESATQT---CYNCNKSGHISRNCPDGTKT 491
Y C K GH +R+C + G+ +T + CY C K+GH SR+C +T
Sbjct: 307 YKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQT 361
Score = 50.4 bits (115), Expect = 1e-06
Identities = 30/81 (37%), Positives = 39/81 (48%), Gaps = 20/81 (24%)
Frame = +3
Query: 291 CYRCNGTGHIAREC-AQSPDEP--------SCYNCNKTGHIARNCP--------EGGR-- 413
CY+C GH AR+C QS P C+ C K GH +R+C E G+
Sbjct: 239 CYKCGKEGHWARDCTVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMK 298
Query: 414 -ESATQTCYNCNKSGHISRNC 473
S++ CY C K GH SR+C
Sbjct: 299 SSSSSGECYKCGKQGHWSRDC 319
Score = 39.1 bits (87), Expect = 0.003
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 118 AMSSSVCYKCNRTGHFARECTQGGVVSRDSGFNRQRE---KCFKCNRTG 255
A + + CYKC + GH+AR+CT V D+G + CFKC + G
Sbjct: 233 AKTGTPCYKCGKEGHWARDCT----VQSDTGPVKSTSAAGDCFKCGKPG 277
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +1
Query: 124 SSSVCYKCNRTGHFARECT-QGGVVSRDSGFNRQREK---CFKCNRTG 255
SS CYKC + GH++R+CT Q SG + C+KC + G
Sbjct: 302 SSGECYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAG 349
Score = 37.1 bits (82), Expect = 0.012
Identities = 18/61 (29%), Positives = 33/61 (54%), Gaps = 6/61 (9%)
Frame = +1
Query: 91 SAQEFSKPIAMSSSV--CYKCNRTGHFARECT-QGGVVSRDSGFNRQRE---KCFKCNRT 252
+ Q + P+ +S+ C+KC + GH++R+CT Q G + G + +C+KC +
Sbjct: 253 TVQSDTGPVKSTSAAGDCFKCGKPGHWSRDCTAQSGNPKYEPGQMKSSSSSGECYKCGKQ 312
Query: 253 G 255
G
Sbjct: 313 G 313
Score = 36.7 bits (81), Expect = 0.015
Identities = 19/49 (38%), Positives = 27/49 (55%), Gaps = 3/49 (6%)
Frame = +1
Query: 91 SAQEFSKPIAMSSSV---CYKCNRTGHFARECTQGGVVSRDSGFNRQRE 228
S Q+F A S+S CYKC + GH++R+CT + G RQR+
Sbjct: 324 SNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNTPG-KRQRQ 371
Score = 33.9 bits (74), Expect = 0.11
Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 14/59 (23%)
Frame = +3
Query: 291 CYRCNGTGHIARECA-QSPDEP-------------SCYNCNKTGHIARNCPEGGRESAT 425
CY+C GH +R+C QS ++ CY C K GH +R+C + + T
Sbjct: 306 CYKCGKQGHWSRDCTGQSSNQQFQSGQAKSTSSTGDCYKCGKAGHWSRDCTSPAQTTNT 364
>At2g37340.3 68415.m04580 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 249
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +3
Query: 150 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPH--RHF-ARDCKEEADRCYRCNGTGHI 320
P A AR + GR G R T E + P R F +R A RC+ C GH
Sbjct: 13 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 69
Query: 321 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 440
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 70 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 109
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 342 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 488
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 55 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 100
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Frame = +3
Query: 375 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCG 506
T +R P G R+ ++ C+NC GH +R+C D CY CG
Sbjct: 34 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCG 86
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
C+ C GH+AR+CT G + KC++C G
Sbjct: 60 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERG 89
>At2g37340.2 68415.m04579 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 260
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +3
Query: 150 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPH--RHF-ARDCKEEADRCYRCNGTGHI 320
P A AR + GR G R T E + P R F +R A RC+ C GH
Sbjct: 24 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 80
Query: 321 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 440
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 81 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 120
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 342 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 488
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 66 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 111
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Frame = +3
Query: 375 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCG 506
T +R P G R+ ++ C+NC GH +R+C D CY CG
Sbjct: 45 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCG 97
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
C+ C GH+AR+CT G + KC++C G
Sbjct: 71 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERG 100
>At2g37340.1 68415.m04581 splicing factor RSZ33 (RSZ33) nearly
identical to splicing factor RSZ33 [Arabidopsis
thaliana] GI:9843663; contains Pfam profiles PF00076:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF00098: Zinc knuckle
Length = 290
Score = 49.6 bits (113), Expect = 2e-06
Identities = 33/100 (33%), Positives = 43/100 (43%), Gaps = 3/100 (3%)
Frame = +3
Query: 150 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPH--RHF-ARDCKEEADRCYRCNGTGHI 320
P A AR + GR G R T E + P R F +R A RC+ C GH
Sbjct: 54 PRDADDARHYLDGRDFDGSRI---TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHW 110
Query: 321 ARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 440
AR+C + CY C + GHI RNC ++ Y+
Sbjct: 111 ARDCTAGDWKNKCYRCGERGHIERNCKNSPKKLRRSGSYS 150
Score = 48.0 bits (109), Expect = 6e-06
Identities = 20/49 (40%), Positives = 26/49 (53%)
Frame = +3
Query: 342 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 488
P C+NC GH AR+C G ++ CY C + GHI RNC + K
Sbjct: 96 PGAGRCFNCGVDGHWARDCTAGDWKNK---CYRCGERGHIERNCKNSPK 141
Score = 32.3 bits (70), Expect = 0.33
Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
Frame = +3
Query: 375 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCG 506
T +R P G R+ ++ C+NC GH +R+C D CY CG
Sbjct: 75 TVEFSRGAPRGSRDFDSRGPPPGAGRCFNCGVDGHWARDCTAGDWKNKCYRCG 127
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
C+ C GH+AR+CT G + KC++C G
Sbjct: 101 CFNCGVDGHWARDCTAGD----------WKNKCYRCGERG 130
>At2g12880.1 68415.m01404 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 119
Score = 49.6 bits (113), Expect = 2e-06
Identities = 25/63 (39%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Frame = +3
Query: 345 DEPSCYNCNKTGHIARNCPEGGR-ESATQTCYNCNKSGHISRNCPDGTKT-------CYV 500
D +CY C K GH AR+C + +A TCY C++ GH S CP+ CY
Sbjct: 32 DPRACYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYW 91
Query: 501 CGN 509
CGN
Sbjct: 92 CGN 94
Score = 42.3 bits (95), Expect = 3e-04
Identities = 20/62 (32%), Positives = 26/62 (41%), Gaps = 6/62 (9%)
Frame = +3
Query: 291 CYRCNGTGHIAREC--AQSPDEP--SCYNCNKTGHIARNCPEGGRESATQT--CYNCNKS 452
CY+C GH AR C P +CY C++ GH + CP + CY C
Sbjct: 36 CYKCGKLGHFARSCHVVTQPTTAYITCYFCSEEGHRSNGCPNKRTDQVNPKGHCYWCGNQ 95
Query: 453 GH 458
H
Sbjct: 96 DH 97
Score = 31.9 bits (69), Expect = 0.44
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +1
Query: 136 CYKCNRTGHFAREC 177
CYKC + GHFAR C
Sbjct: 36 CYKCGKLGHFARSC 49
>At3g53500.2 68416.m05907 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 284
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/83 (31%), Positives = 34/83 (40%)
Frame = +3
Query: 150 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPHRHFARDCKEEADRCYRCNGTGHIARE 329
P A AR + GR G R + +R + RC+ C GH AR+
Sbjct: 54 PRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARD 113
Query: 330 CAQSPDEPSCYNCNKTGHIARNC 398
C + CY C + GHI RNC
Sbjct: 114 CTAGDWKNKCYRCGERGHIERNC 136
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 342 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 473
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 96 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 136
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 255 HFARDCK--EEADRCYRCNGTGHIARECAQSP 344
H+ARDC + ++CYRC GHI R C SP
Sbjct: 109 HWARDCTAGDWKNKCYRCGERGHIERNCKNSP 140
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Frame = +3
Query: 375 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCG 506
T +R P G R++ ++ C+NC GH +R+C D CY CG
Sbjct: 75 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCG 127
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
S C+ C GH+AR+CT G + KC++C G
Sbjct: 98 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERG 130
>At3g53500.1 68416.m05906 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 243
Score = 48.0 bits (109), Expect = 6e-06
Identities = 26/83 (31%), Positives = 34/83 (40%)
Frame = +3
Query: 150 PDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPHRHFARDCKEEADRCYRCNGTGHIARE 329
P A AR + GR G R + +R + RC+ C GH AR+
Sbjct: 13 PRDADDARYYLDGRDFDGSRITVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARD 72
Query: 330 CAQSPDEPSCYNCNKTGHIARNC 398
C + CY C + GHI RNC
Sbjct: 73 CTAGDWKNKCYRCGERGHIERNC 95
Score = 46.8 bits (106), Expect = 1e-05
Identities = 19/44 (43%), Positives = 24/44 (54%)
Frame = +3
Query: 342 PDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 473
P C+NC GH AR+C G ++ CY C + GHI RNC
Sbjct: 55 PGSGRCFNCGVDGHWARDCTAGDWKN---KCYRCGERGHIERNC 95
Score = 39.5 bits (88), Expect = 0.002
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = +3
Query: 255 HFARDCK--EEADRCYRCNGTGHIARECAQSP 344
H+ARDC + ++CYRC GHI R C SP
Sbjct: 68 HWARDCTAGDWKNKCYRCGERGHIERNCKNSP 99
Score = 33.9 bits (74), Expect = 0.11
Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)
Frame = +3
Query: 375 TGHIARNCPEGGRESATQ-------TCYNCNKSGHISRNCP--DGTKTCYVCG 506
T +R P G R++ ++ C+NC GH +R+C D CY CG
Sbjct: 34 TVEASRGAPRGSRDNGSRGPPPGSGRCFNCGVDGHWARDCTAGDWKNKCYRCG 86
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = +1
Query: 127 SSVCYKCNRTGHFARECTQGGVVSRDSGFNRQREKCFKCNRTG 255
S C+ C GH+AR+CT G + KC++C G
Sbjct: 57 SGRCFNCGVDGHWARDCTAGD----------WKNKCYRCGERG 89
>At2g21060.1 68415.m02500 cold-shock DNA-binding family protein /
glycine-rich protein (GRP2) identical to Glycine-rich
protein 2b (AtGRP2b) [Arabidopsis thaliana]
SWISS-PROT:Q38896; contains Pfam domains PF00313:
'Cold-shock' DNA-binding domain and PF00098: Zinc
knuckle
Length = 201
Score = 47.2 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 33/64 (51%)
Frame = +3
Query: 291 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 470
C++C GH+AREC+Q Y+ G + GG +CY+C +SGH +R+
Sbjct: 138 CFKCGEPGHMARECSQGGGG---YSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARD 194
Query: 471 CPDG 482
C G
Sbjct: 195 CTSG 198
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGG 189
CY C +GHFAR+CT GG
Sbjct: 182 CYSCGESGHFARDCTSGG 199
Score = 36.3 bits (80), Expect = 0.020
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGG 189
C+KC GH AREC+QGG
Sbjct: 138 CFKCGEPGHMARECSQGG 155
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/35 (28%), Positives = 16/35 (45%)
Frame = +3
Query: 378 GHIARNCPEGGRESATQTCYNCNKSGHISRNCPDG 482
G+ R G +C+ C + GH++R C G
Sbjct: 120 GYGGRGSGGRGGGGGDNSCFKCGEPGHMARECSQG 154
>At5g20220.1 68418.m02407 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 393
Score = 39.9 bits (89), Expect = 0.002
Identities = 21/73 (28%), Positives = 29/73 (39%), Gaps = 1/73 (1%)
Frame = +3
Query: 261 ARDCKEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-TCY 437
AR E+ + + N R + + C NC + GH CPE G + + C
Sbjct: 234 ARKHASESMKAFFSNPVNREQRSLSMKGTKFYCKNCGQEGHRRHYCPELGTNADRKFRCR 293
Query: 438 NCNKSGHISRNCP 476
C GH R CP
Sbjct: 294 GCGGKGHNRRTCP 306
Score = 35.9 bits (79), Expect = 0.027
Identities = 32/102 (31%), Positives = 38/102 (37%), Gaps = 27/102 (26%)
Frame = +3
Query: 252 RHFARDCKEEADRCYR---CNGTGHIARECAQSPD---------EPSCYNCNKTGHIARN 395
RH+ + ADR +R C G GH R C +S C C + GH +R
Sbjct: 276 RHYCPELGTNADRKFRCRGCGGKGHNRRTCPKSKSIVTKGISTRYHKCGICGERGHNSRT 335
Query: 396 C--PEG------GRESA-------TQTCYNCNKSGHISRNCP 476
C P G G S T C C K GH R CP
Sbjct: 336 CRKPTGVNPSCSGENSGEDGVGKITYACGFCKKMGHNVRTCP 377
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 225
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 345 DEPSCYNCNKTGHIARNCPEG 407
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 279 EADRCYRCNGTGHIAREC 332
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 405 GGRESATQT--CYNCNKSGHISRNCPDG 482
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 38.3 bits (85), Expect = 0.005
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFARECTQG-GVVSRDSGFNRQR 225
+ S CY+C GHFAREC +G G V R S R+R
Sbjct: 86 IEDSKCYECGELGHFARECRRGRGSVRRRSPSPRRR 121
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 12/21 (57%)
Frame = +3
Query: 345 DEPSCYNCNKTGHIARNCPEG 407
++ CY C + GH AR C G
Sbjct: 87 EDSKCYECGELGHFARECRRG 107
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 279 EADRCYRCNGTGHIAREC 332
E +CY C GH AREC
Sbjct: 87 EDSKCYECGELGHFAREC 104
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/28 (39%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Frame = +3
Query: 405 GGRESATQT--CYNCNKSGHISRNCPDG 482
GGR + CY C + GH +R C G
Sbjct: 80 GGRRGGIEDSKCYECGELGHFARECRRG 107
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 37.9 bits (84), Expect = 0.007
Identities = 15/30 (50%), Positives = 17/30 (56%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSGFNRQR 225
CY+C TGHFAREC G R +R R
Sbjct: 101 CYECGETGHFARECRNRGGTGRRRSKSRSR 130
Score = 31.5 bits (68), Expect = 0.58
Identities = 10/23 (43%), Positives = 14/23 (60%)
Frame = +3
Query: 405 GGRESATQTCYNCNKSGHISRNC 473
GGR + CY C ++GH +R C
Sbjct: 92 GGRGGSDLKCYECGETGHFAREC 114
Score = 31.1 bits (67), Expect = 0.77
Identities = 10/15 (66%), Positives = 11/15 (73%)
Frame = +3
Query: 288 RCYRCNGTGHIAREC 332
+CY C TGH AREC
Sbjct: 100 KCYECGETGHFAREC 114
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/18 (55%), Positives = 11/18 (61%)
Frame = +3
Query: 357 CYNCNKTGHIARNCPEGG 410
CY C +TGH AR C G
Sbjct: 101 CYECGETGHFARECRNRG 118
>At4g38680.1 68417.m05477 cold-shock DNA-binding family protein
contains Pfam domains PF00313: 'Cold-shock' DNA-binding
domain and PF00098: Zinc knuckle
Length = 203
Score = 37.5 bits (83), Expect = 0.009
Identities = 20/71 (28%), Positives = 31/71 (43%), Gaps = 7/71 (9%)
Frame = +3
Query: 291 CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQ-------TCYNCNK 449
CY+C GH+AR+C++ G GG + +CY+C +
Sbjct: 131 CYKCGEPGHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGE 190
Query: 450 SGHISRNCPDG 482
SGH +R+C G
Sbjct: 191 SGHFARDCTSG 201
Score = 37.5 bits (83), Expect = 0.009
Identities = 12/18 (66%), Positives = 14/18 (77%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGG 189
CY C +GHFAR+CT GG
Sbjct: 185 CYSCGESGHFARDCTSGG 202
Score = 36.7 bits (81), Expect = 0.015
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +3
Query: 354 SCYNCNKTGHIARNCPEGGR 413
SCY+C ++GH AR+C GGR
Sbjct: 184 SCYSCGESGHFARDCTSGGR 203
Score = 35.9 bits (79), Expect = 0.027
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = +1
Query: 130 SVCYKCNRTGHFARECTQGG 189
S CYKC GH AR+C++GG
Sbjct: 129 SDCYKCGEPGHMARDCSEGG 148
Score = 31.1 bits (67), Expect = 0.77
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 405 GGRESATQTCYNCNKSGHISRNCPDG 482
GG CY C + GH++R+C +G
Sbjct: 122 GGGGRGGSDCYKCGEPGHMARDCSEG 147
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 35.5 bits (78), Expect = 0.036
Identities = 15/31 (48%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Frame = +1
Query: 136 CYKCNRTGHFAREC-TQGGVVSRDSGFNRQR 225
CY+C +GHFAREC ++GG R +R R
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSR 128
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +3
Query: 408 GRESATQTCYNCNKSGHISRNC 473
GR + CY C +SGH +R C
Sbjct: 90 GRGGSDLKCYECGESGHFAREC 111
Score = 29.5 bits (63), Expect = 2.3
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +3
Query: 288 RCYRCNGTGHIAREC 332
+CY C +GH AREC
Sbjct: 97 KCYECGESGHFAREC 111
Score = 29.1 bits (62), Expect = 3.1
Identities = 12/40 (30%), Positives = 18/40 (45%)
Frame = +3
Query: 357 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCP 476
CY C ++GH AR C G + + ++S R P
Sbjct: 98 CYECGESGHFARECRSRGGSGGRRRSRSRSRSPPRYRKSP 137
>At5g43630.1 68418.m05333 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 831
Score = 35.1 bits (77), Expect = 0.047
Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 3/83 (3%)
Frame = +3
Query: 240 VQPHRHFARDCKEEADR--CYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP-EGG 410
+ P A + +EE C+ C GH R+C + D + + +N G
Sbjct: 585 IMPSGSLAENAEEEQRDLICFYCGKKGHCLRDCLEVTD-------TELRDLVQNISVRNG 637
Query: 411 RESATQTCYNCNKSGHISRNCPD 479
RE A+ C C + H + CP+
Sbjct: 638 REEASSLCIRCFQLSHWAATCPN 660
Score = 29.1 bits (62), Expect = 3.1
Identities = 14/39 (35%), Positives = 20/39 (51%)
Frame = +3
Query: 375 TGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKT 491
+G +A N E R+ C+ C K GH R+C + T T
Sbjct: 588 SGSLAENAEEEQRDLI---CFYCGKKGHCLRDCLEVTDT 623
>At3g26420.1 68416.m03295 glycine-rich RNA-binding protein similar
to RNA-binding protein (RZ-1) GB:BAA12064 [Nicotiana
sylvestris]; contains Pfam profile: PF00076 RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Length = 245
Score = 34.3 bits (75), Expect = 0.082
Identities = 14/25 (56%), Positives = 16/25 (64%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVSRDSG 210
C+KC + GHFAREC SRD G
Sbjct: 120 CFKCGKPGHFARECPSES--SRDGG 142
Score = 30.7 bits (66), Expect = 1.0
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 6/50 (12%)
Frame = +3
Query: 357 CYNCNKTGHIARNCPE------GGRESATQTCYNCNKSGHISRNCPDGTK 488
C+ C K GH AR CP GGR S+ Y+ + +++ G K
Sbjct: 120 CFKCGKPGHFARECPSESSRDGGGRFSSKDDRYSSKDDRYGAKDDRYGAK 169
>At3g43490.1 68416.m04611 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 260
Score = 33.9 bits (74), Expect = 0.11
Identities = 12/30 (40%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
Frame = +3
Query: 429 TCYNCNKSGHISRNCPDGT---KTCYVCGN 509
TCY+C + HI+ +CP T K+C++C +
Sbjct: 144 TCYSCGEKDHITVSCPTLTNCRKSCFICAS 173
Score = 31.5 bits (68), Expect = 0.58
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +3
Query: 354 SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNC 473
+CY+C + HI +CP + ++C+ C H +R C
Sbjct: 144 TCYSCGEKDHITVSCPT--LTNCRKSCFICASLEHGARQC 181
>At3g24070.1 68416.m03023 zinc knuckle (CCHC-type) family protein
contains Pfam profile: PF00098 zinc knuckle
Length = 262
Score = 33.5 bits (73), Expect = 0.14
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 7/49 (14%)
Frame = +3
Query: 357 CYNCNKTGHIARNC-------PEGGRESATQTCYNCNKSGHISRNCPDG 482
C+NC H+ARNC P+ S + + N G NC DG
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDG 136
Score = 30.3 bits (65), Expect = 1.3
Identities = 17/55 (30%), Positives = 21/55 (38%), Gaps = 10/55 (18%)
Frame = +3
Query: 291 CYRCNGTGHIAREC----AQSPD------EPSCYNCNKTGHIARNCPEGGRESAT 425
C+ C H+AR C PD P + N G NC +GG S T
Sbjct: 88 CFNCGDMNHLARNCLIPWVDVPDPYERSLSPPPHESNSDGSAEGNCGDGGTSSGT 142
>At4g19130.1 68417.m02823 replication protein-related similar to
replication protein A 70kDa [Oryza sativa] GI:13536993;
contains Pfam profile PF00098: Zinc knuckle
Length = 461
Score = 33.1 bits (72), Expect = 0.19
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 363 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 488
+ +++G + GG AT +C C SGH+S CP TK
Sbjct: 392 HAHQSGQSGNHYSGGG---ATTSCNVCGNSGHVSAKCPGATK 430
>At5g43260.1 68418.m05286 chaperone protein dnaJ-related similar to
Chaperone protein dnaJ (SP:Q9WZV3) [Thermotoga maritima]
Length = 97
Score = 32.7 bits (71), Expect = 0.25
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Frame = +3
Query: 288 RCYRCNGTGHIARECAQ-SPDEPSCYNCNKTGHIA-RNCPEGG 410
RC CNGTG + C++ S + C C+ +G A NC G
Sbjct: 37 RCPTCNGTGRVTCFCSRWSDGDVGCRRCSGSGRAACSNCGGSG 79
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 32.7 bits (71), Expect = 0.25
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGG 189
C+KC R GH+AR+C G
Sbjct: 128 CFKCGRVGHWARDCPSAG 145
Score = 32.3 bits (70), Expect = 0.33
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 348 EPSCYNCNKTGHIARNCPEGG 410
E C+ C + GH AR+CP G
Sbjct: 125 EDECFKCGRVGHWARDCPSAG 145
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/24 (37%), Positives = 13/24 (54%)
Frame = +3
Query: 405 GGRESATQTCYNCNKSGHISRNCP 476
GG C+ C + GH +R+CP
Sbjct: 119 GGGRVGEDECFKCGRVGHWARDCP 142
Score = 27.5 bits (58), Expect = 9.5
Identities = 8/16 (50%), Positives = 11/16 (68%)
Frame = +3
Query: 285 DRCYRCNGTGHIAREC 332
D C++C GH AR+C
Sbjct: 126 DECFKCGRVGHWARDC 141
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 32.3 bits (70), Expect = 0.33
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +3
Query: 411 RESATQTCYNCNKSGHISRNCPD 479
RES +C+ C KSGH + +CPD
Sbjct: 721 RESFGGSCFICGKSGHRATDCPD 743
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 354 SCYNCNKTGHIARNCPE 404
SC+ C K+GH A +CP+
Sbjct: 727 SCFICGKSGHRATDCPD 743
>At2g16500.1 68415.m01892 arginine decarboxylase 1 (SPE1) (ARGDC)
identical to SP|Q9SI64 Arginine decarboxylase 1 (EC
4.1.1.19) (ARGDC 1) (ADC 1) (ADC-O) {Arabidopsis
thaliana}
Length = 702
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/48 (35%), Positives = 25/48 (52%)
Frame = +2
Query: 344 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 487
G +V+ LQ DGPH ++R G AD+L Q P L + +H+
Sbjct: 578 GPSVVRVLQSDGPHGFAVTRAVMGQSSADVLRAMQHEPELMFQTLKHR 625
>At5g49930.1 68418.m06182 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 1080
Score = 31.5 bits (68), Expect = 0.58
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +3
Query: 399 PEGGRESATQTCYNCNKSGHISRNC 473
P + A + CY C K GH++R+C
Sbjct: 915 PSEETDDAVKICYRCKKVGHLARDC 939
Score = 30.7 bits (66), Expect = 1.0
Identities = 8/15 (53%), Positives = 12/15 (80%)
Frame = +1
Query: 133 VCYKCNRTGHFAREC 177
+CY+C + GH AR+C
Sbjct: 925 ICYRCKKVGHLARDC 939
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 357 CYNCNKTGHIARNC 398
CY C K GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/14 (64%), Positives = 11/14 (78%)
Frame = +3
Query: 291 CYRCNGTGHIAREC 332
CYRC GH+AR+C
Sbjct: 926 CYRCKKVGHLARDC 939
>At5g38600.1 68418.m04669 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 532
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 345 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 452
D P C+NC H R CP SA + KS
Sbjct: 239 DPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKS 274
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/45 (28%), Positives = 19/45 (42%)
Frame = +3
Query: 276 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 410
++ RC+ C G H REC + D + + K RN G
Sbjct: 238 DDPPRCFNCGGYSHSLRECPRPFDRSAVNSARKLQKSKRNQNSSG 282
>At3g02820.1 68416.m00274 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 282
Score = 31.5 bits (68), Expect = 0.58
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +3
Query: 414 ESATQTCYNCNKSGHISRNCP 476
ESA C+ C + GH SR+CP
Sbjct: 2 ESAPTGCFKCGRPGHWSRDCP 22
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGGVVS 198
C+KC R GH++R+C V+
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVA 28
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/38 (23%), Positives = 17/38 (44%)
Frame = +3
Query: 357 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 470
C+ C + GH +R+CP + + + + I N
Sbjct: 8 CFKCGRPGHWSRDCPSSAPVAGNNSVSSSSAPSQIPNN 45
>At2g15180.1 68415.m01731 zinc knuckle (CCHC-type) family protein
contains Pfam domain PF00098: Zinc knuckle
Length = 474
Score = 31.5 bits (68), Expect = 0.58
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = +3
Query: 348 EPSCYNCNKTGHIARNCPEGGRESATQ 428
E +CY C + GHIA+ CP RE+ T+
Sbjct: 224 ELTCYRCKQEGHIAKICPT--RETTTK 248
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 429 TCYNCNKSGHISRNCPDGTKTCYV 500
TCY C + GHI++ CP T V
Sbjct: 226 TCYRCKQEGHIAKICPTRETTTKV 249
>At1g60650.2 68414.m06828 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.58
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGG 189
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.77
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 348 EPSCYNCNKTGHIARNCPEGG 410
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 273 KEEADRCYRCNGTGHIARECAQSPDE 350
K D C++C GH AR+C + D+
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTGDD 136
>At1g60650.1 68414.m06827 glycine-rich RNA-binding protein, putative
similar to RNA binding protein(RZ-1) GI:1435061 from
[Nicotiana sylvestris]; contains InterPro entry
IPR000504: RNA-binding region RNP-1 (RNA recognition
motif) (RRM)
Length = 292
Score = 31.5 bits (68), Expect = 0.58
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQGG 189
C+KC R GH+AR+C G
Sbjct: 117 CFKCRRPGHWARDCPSTG 134
Score = 31.1 bits (67), Expect = 0.77
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = +3
Query: 348 EPSCYNCNKTGHIARNCPEGG 410
E C+ C + GH AR+CP G
Sbjct: 114 EDECFKCRRPGHWARDCPSTG 134
Score = 29.9 bits (64), Expect = 1.8
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +3
Query: 273 KEEADRCYRCNGTGHIARECAQSPDE 350
K D C++C GH AR+C + D+
Sbjct: 111 KGTEDECFKCRRPGHWARDCPSTGDD 136
>At3g31950.1 68416.m04046 hypothetical protein
Length = 507
Score = 31.1 bits (67), Expect = 0.77
Identities = 18/64 (28%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Frame = +3
Query: 297 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNC----PEGGRESATQTCYNCNKSGHIS 464
R + R+ A +P + C C T H+ +C P CY C GH+S
Sbjct: 268 RATARKSVGRKLA-TPAKRPCDICGHTDHLTEDCLYSSPTMPYMDNYTKCYCCRGLGHVS 326
Query: 465 RNCP 476
CP
Sbjct: 327 MYCP 330
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 30.7 bits (66), Expect = 1.0
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 1/64 (1%)
Frame = +3
Query: 264 RDCKEEAD-RCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYN 440
RDC+ A RCY G AR C + PS N + I E G SA ++
Sbjct: 126 RDCRNMASIRCYPSRGEEEEARYCGKQLLSPSSDNYQDSSDI-----ESGSVSARHELFS 180
Query: 441 CNKS 452
C S
Sbjct: 181 CKSS 184
>At5g47430.1 68418.m05844 expressed protein
Length = 879
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 17/38 (44%)
Frame = +3
Query: 297 RCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGG 410
R NG G E P C+ CN GH ++CP G
Sbjct: 191 RMNGRG-FGMERKTPPPGYVCHRCNIPGHFIQHCPTNG 227
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQGG 189
VC++CN GHF + C G
Sbjct: 209 VCHRCNIPGHFIQHCPTNG 227
>At5g47390.1 68418.m05840 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 365
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 423 TQTCYNCNKSGHISRNCPD 479
T+ C +CN +GH SR CP+
Sbjct: 2 TRRCSHCNHNGHNSRTCPN 20
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = +3
Query: 357 CYNCNKTGHIARNCPEGG 410
C +CN GH +R CP G
Sbjct: 5 CSHCNHNGHNSRTCPNRG 22
>At5g32482.1 68418.m03835 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 341
Score = 30.3 bits (65), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 106 SKPIAMSSSVCYKCNRTGHFAREC 177
+KP + SVCY+C H+A+ C
Sbjct: 268 NKPRGKAKSVCYRCGMDDHWAKTC 291
>At4g39960.1 68417.m05660 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 447
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
Frame = +3
Query: 285 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHIARNCPEG-GRESATQTCYNCNKSGH 458
+ C CNG+G A++ +P+ C C G + + G TC CN +G
Sbjct: 228 ESCGTCNGSG------AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGE 281
Query: 459 ISRNC 473
IS+ C
Sbjct: 282 ISKPC 286
>At4g17410.1 68417.m02607 expressed protein
Length = 744
Score = 30.3 bits (65), Expect = 1.3
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 133 VCYKCNRTGHFARECTQGG 189
VC++CN +GHF + C+ G
Sbjct: 120 VCHRCNVSGHFIQHCSTNG 138
>At4g12200.1 68417.m01937 zinc knuckle (CCHC-type) family protein
contains Pfam profile PF00098: Zinc knuckle
Length = 200
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/52 (25%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 318 IARECAQSPDEP-SCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 470
++R+ ++S E +C+ C + GH +CP E + Y ++ RN
Sbjct: 147 VSRDRSKSKGEKGACWICGEDGHYKNDCPSRNSEKPKEHAYKAQEASVPRRN 198
>At3g45480.1 68416.m04911 zinc finger (C3HC4-type RING finger)
family protein contains a zinc finger, C3HC4 type (RING
finger), signature, PROSITE:PS00518
Length = 373
Score = 30.3 bits (65), Expect = 1.3
Identities = 22/72 (30%), Positives = 27/72 (37%), Gaps = 11/72 (15%)
Frame = +3
Query: 324 RECAQSPDEPSCYNCNKTGHIARNCPE---GGRESAT---QTCYNCNKSGHISRN----- 470
R C + C NC H +C E GRE T + C +C +S
Sbjct: 267 RRCCYKCRKHFCINCKVPWHSNLSCKEHKSSGREPITTVWRQCRSCLHKIKLSEERMPVT 326
Query: 471 CPDGTKTCYVCG 506
C G K CY CG
Sbjct: 327 CRCGYKFCYACG 338
>At1g67210.2 68414.m07647 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 403
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 276 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 413
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 345 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 488
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At1g67210.1 68414.m07646 proline-rich spliceosome-associated (PSP)
family protein / zinc knuckle (CCHC-type) family protein
contains Pfam domains PF00098: Zinc knuckle, PF04046:
PSP
Length = 405
Score = 30.3 bits (65), Expect = 1.3
Identities = 13/46 (28%), Positives = 19/46 (41%)
Frame = +3
Query: 276 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGR 413
++ RC+ C H REC + D + N + RN G R
Sbjct: 193 DDPPRCFNCGAYSHSIRECPRPFDRSAVSNARRQHKRKRNQTPGSR 238
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = +3
Query: 345 DEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTK 488
D P C+NC H R CP SA N + RN G++
Sbjct: 194 DPPRCFNCGAYSHSIRECPRPFDRSAVS---NARRQHKRKRNQTPGSR 238
>At4g34710.2 68417.m04927 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 344 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 487
G +V+ Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At4g34710.1 68417.m04926 arginine decarboxylase 2 (SPE2) identical
to SP|O23141 Arginine decarboxylase 2 (EC 4.1.1.19)
(ARGDC 2) (ADC 2) (ADC-N) {Arabidopsis thaliana}
Length = 711
Score = 29.9 bits (64), Expect = 1.8
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +2
Query: 344 GRAVMLQLQQDGPHRTELSRGGAGVCDADLL*LQQVRPHLPQLSRRHQ 487
G +V+ Q DGPH ++R G AD+L Q P L + +H+
Sbjct: 590 GPSVVRVSQSDGPHSFAVTRAVPGQSSADVLRAMQHEPELMFQTLKHR 637
>At3g16350.1 68416.m02068 myb family transcription factor ; contains
Pfam profile: PF00249 Myb-like DNA-binding domain
Length = 387
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
Frame = +3
Query: 423 TQTCYNCNKSGHISRNCPD-GTKTC 494
T+ C +C+ +GH SR CP G TC
Sbjct: 2 TRRCSHCSNNGHNSRTCPTRGGGTC 26
>At1g53720.1 68414.m06113 cyclophilin-RNA interacting protein,
putative
Length = 506
Score = 29.9 bits (64), Expect = 1.8
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 273 KEEADRCYRCNGTGHIARECAQSP 344
K + + C++C T HIA++C P
Sbjct: 336 KGKGNGCFKCGSTDHIAKDCVGGP 359
Score = 27.5 bits (58), Expect = 9.5
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +1
Query: 136 CYKCNRTGHFARECTQG 186
C+KC T H A++C G
Sbjct: 342 CFKCGSTDHIAKDCVGG 358
>At5g63920.1 68418.m08026 DNA topoisomerase III alpha, putative
similar to Swiss-Prot:Q9NG98 DNA topoisomerase III alpha
[Drosophila melanogaster]
Length = 926
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/33 (33%), Positives = 15/33 (45%)
Frame = +3
Query: 378 GHIARNCPEGGRESATQTCYNCNKSGHISRNCP 476
G N +G + C +C + GH S NCP
Sbjct: 749 GTAPSNNIQGSNTRQSNVCIHCQQRGHASTNCP 781
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/51 (29%), Positives = 22/51 (43%)
Frame = +3
Query: 357 CYNCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRNCPDGTKTCYVCGN 509
C +C + GH + NCP S N + RN + T +C CG+
Sbjct: 767 CIHCQQRGHASTNCP-----SRVPASRNSRPTATNPRN-DESTVSCNTCGS 811
>At5g51300.2 68418.m06360 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 345 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 476
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At5g51300.1 68418.m06359 splicing factor-related contains
similarity to SF1 protein [Drosophila melanogaster]
GI:6687400
Length = 804
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 1/45 (2%)
Frame = +3
Query: 345 DEPSCYNCNKTGHIARNCPEGGRESATQT-CYNCNKSGHISRNCP 476
DE C C + GH CP + C C GH + +CP
Sbjct: 359 DEEFCRLCGEPGHRQYACPSRTNTFKSDVLCKICGDGGHPTIDCP 403
>At3g01620.1 68416.m00093 glycosyl transferase family 17 protein low
similarity to beta-1,4-mannosyl-glycoprotein
beta-1,4-N-acetylglucosaminyltransferase (EC 2.4.1.144)
from Mus musculus [SP|Q10470], Rattus norvegicus
[SP|Q02527], Homo sapiens [SP|Q09327] ; contains Pfam
profile PF04724 :Glycosyltransferase family 17
Length = 388
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -3
Query: 717 KQVETLTLQVCGADAASAICTVNRLSCVARG 625
K+ +T+ VCG + + A ++RL CV RG
Sbjct: 9 KKTDTICEDVCGQEGSRAGKAISRLRCVLRG 39
>At1g75690.1 68414.m08793 chaperone protein dnaJ-related contains
Pfam PF00684 : DnaJ central domain (4 repeats); similar
to bundle sheath defective protein 2 (GI:4732091) [Zea
mays]
Length = 154
Score = 29.5 bits (63), Expect = 2.3
Identities = 19/64 (29%), Positives = 28/64 (43%)
Frame = +3
Query: 273 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 452
+E C+ CNGTG AQ C C +G++ GG E C NC+ +
Sbjct: 81 RENTQPCFPCNGTG------AQ-----KCRLCVGSGNVTVEL--GGGEKEVSNCINCDGA 127
Query: 453 GHIS 464
G ++
Sbjct: 128 GSLT 131
>At1g54490.1 68414.m06215 5'-3' exoribonuclease (XRN4) identical to
XRN4 [Arabidopsis thaliana] GI:11875626; contains Pfam
domain PF03159: Putative 5'-3' exonuclease domain
Length = 947
Score = 29.5 bits (63), Expect = 2.3
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 318 IARECAQSP-DEPSCYNCNKTGHIARNCP 401
I RE P + C+ C +TGH A +CP
Sbjct: 251 ILREVITYPGQQEKCFVCGQTGHFASDCP 279
Score = 27.9 bits (59), Expect = 7.2
Identities = 8/14 (57%), Positives = 11/14 (78%)
Frame = +1
Query: 136 CYKCNRTGHFAREC 177
C+ C +TGHFA +C
Sbjct: 265 CFVCGQTGHFASDC 278
>At5g61670.2 68418.m07738 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 273 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 428
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 429 TCYNCNKSGHISRNCP 476
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At5g61670.1 68418.m07737 expressed protein
Length = 307
Score = 29.1 bits (62), Expect = 3.1
Identities = 23/76 (30%), Positives = 33/76 (43%), Gaps = 8/76 (10%)
Frame = +3
Query: 273 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCP----EGGRES----ATQ 428
++E RC C GTG++A C C+ TG + P GG S T+
Sbjct: 224 QQEHKRCKYCLGTGYLA-----------CARCSSTGALVLTEPVSAIAGGNHSLSPPKTE 272
Query: 429 TCYNCNKSGHISRNCP 476
C NC+ +G + CP
Sbjct: 273 RCSNCSGAGKVM--CP 286
>At4g06479.1 68417.m00885 hypothetical protein
Length = 370
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/74 (25%), Positives = 26/74 (35%), Gaps = 8/74 (10%)
Frame = +3
Query: 201 GFRFQSAT*EVLQVQPHRHFARDCKEEADR-CYRCNGTGHIARECAQSP-------DEPS 356
G+ S +Q + + A R C C+ T H EC P D
Sbjct: 267 GYGINSKVKPGIQATARKSVGKKLATPAKRPCEICSHTDHPTEECLYPPQTIPYTDDYAK 326
Query: 357 CYNCNKTGHIARNC 398
CY C GH++ C
Sbjct: 327 CYYCEGMGHMSMYC 340
>At2g38000.1 68415.m04664 chaperone protein dnaJ-related weak
similarity to Chaperone protein dnaJ (Swiss-Prot:Q9ZFC5)
[Methylovorus sp.]
Length = 419
Score = 29.1 bits (62), Expect = 3.1
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 3/70 (4%)
Frame = +3
Query: 276 EEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEG---GRESATQTCYNCN 446
E ++C C G G + + EP Y N+ + G ++ + C NCN
Sbjct: 196 ETVEKCTGCTGRGDVVCPTCNADGEPGFYKENQMMKCSTCYGRGLVAHKDGSDTICTNCN 255
Query: 447 KSGHISRNCP 476
G + CP
Sbjct: 256 GKGKLP--CP 263
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 29.1 bits (62), Expect = 3.1
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +3
Query: 432 CYNCNKSGHISRNCPDGTKT 491
C++C++ GH ++NCP T T
Sbjct: 6 CFHCHQPGHWAKNCPLKTTT 25
Score = 29.1 bits (62), Expect = 3.1
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 357 CYNCNKTGHIARNCP 401
C++C++ GH A+NCP
Sbjct: 6 CFHCHQPGHWAKNCP 20
Score = 28.7 bits (61), Expect = 4.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 121 MSSSVCYKCNRTGHFAREC 177
MSS C+ C++ GH+A+ C
Sbjct: 1 MSSGDCFHCHQPGHWAKNC 19
>At5g06130.2 68418.m00682 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 315
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 273 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 452
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 232 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 288
Query: 453 GHISRNCP 476
G + CP
Sbjct: 289 GKVM--CP 294
>At5g06130.1 68418.m00681 chaperone protein dnaJ-related similar to
unknown protein (pir||T00468); contains Pfam PF00684 :
DnaJ central domain (4 repeats)
Length = 231
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = +3
Query: 273 KEEADRCYRCNGTGHIARECAQSPDEPSCYNCNKTGHIARNCPEGGRESATQTCYNCNKS 452
++E RC C GTG++ CA+ C + + R + + + T+ C NC+ +
Sbjct: 148 QQEKKRCKYCLGTGYL--PCARCSASGVCLSIDPITR-PRATNQLMQVATTKRCLNCSGA 204
Query: 453 GHISRNCP 476
G + CP
Sbjct: 205 GKVM--CP 210
>At3g55340.1 68416.m06146 RNA recognition motif (RRM)-containing
protein low similarity to nucleolar phosphoprotein
(Nopp52), Tetrahymena thermophila, EMBL:TT51555;
contains InterPro entry IPR000504: RNA-binding region
RNP-1 (RNA recognition motif) (RRM)
Length = 597
Score = 28.7 bits (61), Expect = 4.1
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +3
Query: 426 QTCYNCNKSGHISRNCPD 479
+ CY C + GH+S CP+
Sbjct: 574 RNCYECGEKGHLSSACPN 591
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 426 QTCYNCNKSGHISRNCP 476
+ CY C + GH+S CP
Sbjct: 395 RVCYECGEKGHLSTACP 411
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/17 (47%), Positives = 11/17 (64%)
Frame = +3
Query: 426 QTCYNCNKSGHISRNCP 476
+ CY C + GH+S CP
Sbjct: 479 RNCYECGEKGHLSTACP 495
>At2g38560.1 68415.m04737 transcription factor S-II (TFIIS)
domain-containing protein similar to SP|P49373
Transcription elongation factor S-II (TFIIS)
{Schizosaccharomyces pombe}; contains Pfam profile
PF01096: Transcription factor S-II (TFIIS)
Length = 378
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = -3
Query: 468 CGRCGRTCCSYSRSASQTPAPPRDSSVRC 382
CGRCG+ C+Y + +++ P + V C
Sbjct: 340 CGRCGQRKCTYYQMQTRSADEPMTTYVTC 368
>At4g30200.3 68417.m04295 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 702
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 363 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 470
NCN H A E G E + SGHI +N
Sbjct: 594 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 629
>At4g30200.2 68417.m04294 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 714
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 363 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 470
NCN H A E G E + SGHI +N
Sbjct: 606 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 641
>At4g30200.1 68417.m04293 expressed protein contains weak
similarities to Pfam profiles: PF00041 Fibronectin type
III domain, PF00628 PHD-finger; supporting cDNA
gi|11177136|dbj|AB050977.1|
Length = 685
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +3
Query: 363 NCNKTGHIARNCPEGGRESATQTCYNCNKSGHISRN 470
NCN H A E G E + SGHI +N
Sbjct: 577 NCNNGDHSANGGTESGLEHCVKIIRQLECSGHIDKN 612
>At3g10400.1 68416.m01246 RNA recognition motif (RRM)-containing
protein low similarity to splicing factor SC35
[Arabidopsis thaliana] GI:9843653; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 261
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 94 AQEF-SKPIAMSSSVCYKCNRTGHFARECTQGGVVSRD 204
A EF K + S CY+C GH + EC + + R+
Sbjct: 139 ASEFIKKRVYKDKSRCYECGDEGHLSYECPKNQLGPRE 176
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/22 (36%), Positives = 14/22 (63%)
Frame = +3
Query: 276 EEADRCYRCNGTGHIARECAQS 341
++ RCY C GH++ EC ++
Sbjct: 149 KDKSRCYECGDEGHLSYECPKN 170
Score = 28.3 bits (60), Expect = 5.4
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +3
Query: 345 DEPSCYNCNKTGHIARNCPE 404
D+ CY C GH++ CP+
Sbjct: 150 DKSRCYECGDEGHLSYECPK 169
Score = 27.5 bits (58), Expect = 9.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 432 CYNCNKSGHISRNCP 476
CY C GH+S CP
Sbjct: 154 CYECGDEGHLSYECP 168
>At4g06526.1 68417.m00938 hypothetical protein
Length = 506
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/44 (31%), Positives = 18/44 (40%), Gaps = 7/44 (15%)
Frame = +3
Query: 291 CYRCNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 401
C C+ T H +EC P D C C GH++ CP
Sbjct: 282 CEICSHTDHPTKECLYPPHTMPYMDDCAKCSCCGGVGHMSMYCP 325
>At2g31850.1 68415.m03889 expressed protein
Length = 113
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/51 (33%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Frame = -3
Query: 480 RRDSCGRCGRT---CCSYSRSASQTPAPPRDSSVRCGPSCCSCNMTARPGS 337
R+D G G + C S S P S SCC C+ TA GS
Sbjct: 61 RQDDAGLSGSSTGSCSSPDSSTGSNSVPAPVPSPAPAGSCCCCSSTADSGS 111
>At2g22360.1 68415.m02653 DNAJ heat shock family protein similar to
SP|Q9S5A3 Chaperone protein dnaJ {Listeria
monocytogenes}; contains Pfam profiles PF00226 DnaJ
domain, PF01556 DnaJ C terminal region, PF00684 DnaJ
central domain (4 repeats)
Length = 442
Score = 27.9 bits (59), Expect = 7.2
Identities = 20/66 (30%), Positives = 29/66 (43%), Gaps = 3/66 (4%)
Frame = +3
Query: 285 DRCYRCNGTGHIARECAQSPDEPS-CYNCNKTGHI--ARNCPEGGRESATQTCYNCNKSG 455
+ C C G+G A+ +P+ C C G + A P G + TC +CN +G
Sbjct: 222 ESCGTCEGSG------AKPGTKPTKCTTCGGQGQVVSAARTPLGVFQQV-MTCSSCNGTG 274
Query: 456 HISRNC 473
IS C
Sbjct: 275 EISTPC 280
>At5g34870.1 68418.m04106 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 516
Score = 27.5 bits (58), Expect = 9.5
Identities = 12/41 (29%), Positives = 16/41 (39%), Gaps = 7/41 (17%)
Frame = +3
Query: 300 CNGTGHIARECAQSP-------DEPSCYNCNKTGHIARNCP 401
C H +C P D CY+C GH++ CP
Sbjct: 339 CGYIDHPTEQCLHPPQAMPYMVDCAKCYSCGGVGHVSMYCP 379
>At5g07270.1 68418.m00829 ankyrin repeat family protein contains
ankyrin repeats, Pfam:PF00023
Length = 513
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/44 (36%), Positives = 18/44 (40%)
Frame = -3
Query: 501 TRSTSWCRRDSCGRCGRTCCSYSRSASQTPAPPRDSSVRCGPSC 370
T + C C RC CS S S T PP S+ C P C
Sbjct: 321 TVAAEGCEHQLCVRCALYLCSSSNVPSVTVGPP--GSIPC-PLC 361
>At4g05360.1 68417.m00818 zinc knuckle (CCHC-type) family protein
contains Pfam domain, PF00098: Zinc knuckle
Length = 735
Score = 27.5 bits (58), Expect = 9.5
Identities = 20/65 (30%), Positives = 27/65 (41%)
Frame = +3
Query: 138 LQVQPDRAFRARMHAGGRGVAGFRFQSAT*EVLQVQPHRHFARDCKEEADRCYRCNGTGH 317
LQ +P R FR H G V G + +L+ + A D + +CY GH
Sbjct: 616 LQSEPRRVFRPVCHHCG--VVG-HIRPRCFRLLREKNRLMNAYDVRFHGPKCYHYGVQGH 672
Query: 318 IAREC 332
I R C
Sbjct: 673 IKRNC 677
>At1g75660.1 68414.m08789 5'-3' exoribonuclease (XRN3) identical to
XRN3 [Arabidopsis thaliana] gi|11875628|gb|AAG40732
Length = 1020
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/28 (39%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = +3
Query: 318 IARECAQSPDEPS-CYNCNKTGHIARNC 398
I RE +P + C+ C + GH A NC
Sbjct: 250 ILREVVYTPGQQERCFLCGQMGHFASNC 277
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 27.5 bits (58), Expect = 9.5
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = +3
Query: 270 CKEEADRCYRCNGTGHIARECA 335
C EE +R CNG G +A E A
Sbjct: 827 CHEENNRVMNCNGRGSVAGEMA 848
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,811,246
Number of Sequences: 28952
Number of extensions: 306533
Number of successful extensions: 1396
Number of sequences better than 10.0: 77
Number of HSP's better than 10.0 without gapping: 947
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1282
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1565336320
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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