Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30566
         (721 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces pombe...    91   1e-19
SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces p...    27   2.0  
SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces pombe...    27   2.7  

>SPMIT.01 |cox1||cytochrome c oxidase 1|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 537

 Score = 91.5 bits (217), Expect = 1e-19
 Identities = 46/84 (54%), Positives = 54/84 (64%)
 Frame = -2

Query: 510 IGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFT 331
           IGF+ LFT+GGLTGVIL+NS +DI  HDTY+VVAHFHYVLS               P   
Sbjct: 349 IGFLILFTIGGLTGVILSNSVLDIAFHDTYFVVAHFHYVLSMGALFGLCGAYY-WSPKMF 407

Query: 330 GLSLNSYILKIQFFTIFIGVNITF 259
           GL  N  +  IQF+ +FIGVNI F
Sbjct: 408 GLMYNETLASIQFWILFIGVNIVF 431



 Score = 56.8 bits (131), Expect = 3e-09
 Identities = 24/40 (60%), Positives = 34/40 (85%)
 Frame = -3

Query: 647 GIDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYN 528
           G+D+DTRAYF++AT++IA+PTGIKIF  LAT+ G  I ++
Sbjct: 302 GLDVDTRAYFSAATMVIAIPTGIKIFSWLATLTGGAIQWS 341



 Score = 34.3 bits (75), Expect = 0.018
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = -1

Query: 253 QHFLGLAGIPRRYSDYPD 200
           QHFLGL G+PRR  DYP+
Sbjct: 434 QHFLGLNGMPRRIPDYPE 451


>SPAC16A10.04 |rho4||Rho family GTPase Rho4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 203

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 184 FMKYMSLDNLNIVEVFQLNLKNVVKKCYIYSNKYC 288
           +++  + +N  + EVFQL +   +KK + +S K C
Sbjct: 166 YVECSAKENTGVNEVFQLAVGLTIKKSFSFSKKSC 200


>SPAC30D11.06c |||DUF300 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 426

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 334 YRPFIKFLYTKNSIFYNIYWSKYNIFSQHFLGL 236
           +RPF KFL  K  IF + YW +  +   ++LGL
Sbjct: 201 FRPFPKFLSVKAIIFAS-YWQQTVLSITNWLGL 232


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,151,622
Number of Sequences: 5004
Number of extensions: 34505
Number of successful extensions: 83
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 79
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 82
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)