Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30566
(721 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10) 105 4e-23
SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.) 43 2e-04
SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.006
SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.) 36 0.025
SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.2
SB_30239| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9
SB_13289| Best HMM Match : DUF543 (HMM E-Value=10) 28 8.8
>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
Length = 229
Score = 105 bits (252), Expect = 4e-23
Identities = 52/89 (58%), Positives = 59/89 (66%)
Frame = -2
Query: 510 IGFVFLFTVGGLTGVILANSSIDITLHDTYYVVAHFHYVLSXXXXXXXXXXXIN*YPLFT 331
IGFVFLFT+GGLTGVILANSS+D+ +HDTYYVVAHFHYVLS + T
Sbjct: 46 IGFVFLFTIGGLTGVILANSSLDVVMHDTYYVVAHFHYVLSMGAVFAIFAGFYFWFGKIT 105
Query: 330 GLSLNSYILKIQFFTIFIGVNITFFHNIF 244
G N KI F+ +FIGVNITFF F
Sbjct: 106 GYCYNELYGKIHFWIMFIGVNITFFPQHF 134
Score = 55.2 bits (127), Expect = 5e-08
Identities = 25/43 (58%), Positives = 35/43 (81%)
Frame = -3
Query: 644 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL 516
+++DTRAYFT+AT+IIAVPTGIK+F LAT++G I + +L
Sbjct: 1 MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPML 43
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Frame = -1
Query: 313 LYTKNSIFYNIYWSKYNIFSQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 134
LY K + F QHFLGLAG PRRYSD+ D
Sbjct: 112 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 171
Query: 133 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 2
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 172 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 219
>SB_20687| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 43.2 bits (97), Expect = 2e-04
Identities = 33/108 (30%), Positives = 42/108 (38%), Gaps = 4/108 (3%)
Frame = -1
Query: 313 LYTKNSIFYNIYWSKYNIFSQHFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXX 134
LY K + F QHFLGLAG PRRYSD+ D
Sbjct: 26 LYGKIHFWIMFIGVNITFFPQHFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVW 85
Query: 133 XXXXXXXXXINQ-RINLFSLNLPS---SIE*YQNLPPAEHSYNELPIL 2
+ + + + N S S+E Q PPA H+YNELP +
Sbjct: 86 FIFVVYDAYVREVKFIGWVENTGSSWPSLEWVQQSPPALHTYNELPFV 133
Score = 33.1 bits (72), Expect = 0.23
Identities = 16/30 (53%), Positives = 18/30 (60%)
Frame = -2
Query: 333 TGLSLNSYILKIQFFTIFIGVNITFFHNIF 244
TG N KI F+ +FIGVNITFF F
Sbjct: 19 TGYCYNELYGKIHFWIMFIGVNITFFPQHF 48
>SB_57614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -1
Query: 250 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 74
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 73 LPS---SIE*YQNLPPAEHSYNELPIL 2
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_50221| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -1
Query: 250 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 74
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 73 LPS---SIE*YQNLPPAEHSYNELPIL 2
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_39830| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -1
Query: 250 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 74
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 73 LPS---SIE*YQNLPPAEHSYNELPIL 2
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_15102| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -1
Query: 250 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 74
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 73 LPS---SIE*YQNLPPAEHSYNELPIL 2
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_3498| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 95
Score = 38.3 bits (85), Expect = 0.006
Identities = 28/87 (32%), Positives = 36/87 (41%), Gaps = 4/87 (4%)
Frame = -1
Query: 250 HFLGLAGIPRRYSDYPDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXINQ-RINLFSLN 74
HFLGLAG PRRYSD+ D + + + + N
Sbjct: 1 HFLGLAGFPRRYSDFADGYAGWNLVCSFGSTISVVGVVWFIFVVYDAYVREVKFIGWVEN 60
Query: 73 LPS---SIE*YQNLPPAEHSYNELPIL 2
S S+E Q PPA H+YNELP +
Sbjct: 61 TGSSWPSLEWVQQSPPALHTYNELPFV 87
>SB_5733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 70
Score = 36.3 bits (80), Expect = 0.025
Identities = 14/17 (82%), Positives = 15/17 (88%)
Frame = -1
Query: 250 HFLGLAGIPRRYSDYPD 200
HFLGLAG PRRYSD+ D
Sbjct: 1 HFLGLAGFPRRYSDFAD 17
>SB_27609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 707
Score = 29.9 bits (64), Expect = 2.2
Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 2/34 (5%)
Frame = -1
Query: 346 ISFIYRPFIKFLYTKNSIFYNIYWSK--YNIFSQ 251
+ FIY + FL +KN F+ YW+ YN F Q
Sbjct: 14 VGFIYVAKVVFLLSKNKSFFFEYWTPVVYNAFGQ 47
>SB_30239| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 525
Score = 29.5 bits (63), Expect = 2.9
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +2
Query: 437 VISIEELAKITPVNPPTVNKNTKPIFIKY*GYN*FEFHVL 556
V+ + + KI P N P VN +T+P+ G+N F+ +V+
Sbjct: 65 VLPLSQTGKIDPFNQPKVNGHTRPVLDL--GWNPFDDNVI 102
>SB_13289| Best HMM Match : DUF543 (HMM E-Value=10)
Length = 319
Score = 27.9 bits (59), Expect = 8.8
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = -2
Query: 75 ISHHQLNDIKIYHQQNIHIMNYQF 4
I+HHQ + I I H Q+ I+NY +
Sbjct: 296 INHHQSSSIIINHHQSSSIINYYY 319
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,280,701
Number of Sequences: 59808
Number of extensions: 208871
Number of successful extensions: 391
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 353
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 390
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1913853903
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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