Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30566
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical pr...    28   7.7  
Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical p...    28   7.7  
AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.      28   7.7  

>Z78543-6|CAB01756.1| 2962|Caenorhabditis elegans Hypothetical protein
            C35C5.1 protein.
          Length = 2962

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -1

Query: 334  YRPFIKFLYTKNSIF-YNIYWSKY--NIFSQH 248
            YRPF K + T +SIF +N+Y  ++  N  S+H
Sbjct: 2463 YRPFAKLIATYDSIFKFNVYLFEHFLNCISKH 2494


>Z78417-13|CAB01693.1| 2962|Caenorhabditis elegans Hypothetical
            protein C35C5.1 protein.
          Length = 2962

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -1

Query: 334  YRPFIKFLYTKNSIF-YNIYWSKY--NIFSQH 248
            YRPF K + T +SIF +N+Y  ++  N  S+H
Sbjct: 2463 YRPFAKLIATYDSIFKFNVYLFEHFLNCISKH 2494


>AF111934-1|AAD18003.1| 2962|Caenorhabditis elegans SDC-2 protein.
          Length = 2962

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/32 (43%), Positives = 21/32 (65%), Gaps = 3/32 (9%)
 Frame = -1

Query: 334  YRPFIKFLYTKNSIF-YNIYWSKY--NIFSQH 248
            YRPF K + T +SIF +N+Y  ++  N  S+H
Sbjct: 2463 YRPFAKLIATYDSIFKFNVYLFEHFLNCISKH 2494


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,399,090
Number of Sequences: 27780
Number of extensions: 180950
Number of successful extensions: 444
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 444
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)