Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30565
(576 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 154 1e-38
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 154 1e-38
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 154 1e-38
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 41 1e-04
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 30 0.21
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 30 0.28
SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3 |Schizosacchar... 29 0.49
SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces... 28 0.85
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|... 27 2.6
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 26 3.4
SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces... 26 4.5
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 4.5
SPAC14C4.08 |mug5||meiotically upregulated gene Mug5|Schizosacch... 25 6.0
SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces... 25 6.0
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 25 6.0
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 25 7.9
SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch... 25 7.9
SPAC1B3.08 |||COP9 signalosome complex subunit 12 |Schizosacchar... 25 7.9
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 154 bits (373), Expect = 1e-38
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +3
Query: 255 SNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIG 434
S RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G
Sbjct: 160 SARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVG 219
Query: 435 KASTVKRGTSAGRKVGLIAARRTG 506
++TV R ++ G+KVGLIAARRTG
Sbjct: 220 HSTTVPRQSAPGQKVGLIAARRTG 243
Score = 128 bits (309), Expect = 6e-31
Identities = 55/83 (66%), Positives = 68/83 (81%)
Frame = +1
Query: 10 SRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 189
+ +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++G
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVG 137
Query: 190 HNPDAKRTRVKLPSGAKKVLPSA 258
H+ D +TRVKLPSGAKKV+PS+
Sbjct: 138 HDVDTGKTRVKLPSGAKKVVPSS 160
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 154 bits (373), Expect = 1e-38
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +3
Query: 255 SNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIG 434
S RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G
Sbjct: 160 SARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVG 219
Query: 435 KASTVKRGTSAGRKVGLIAARRTG 506
++TV R ++ G+KVGLIAARRTG
Sbjct: 220 HSTTVPRQSAPGQKVGLIAARRTG 243
Score = 128 bits (309), Expect = 6e-31
Identities = 55/83 (66%), Positives = 68/83 (81%)
Frame = +1
Query: 10 SRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 189
+ +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++G
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVG 137
Query: 190 HNPDAKRTRVKLPSGAKKVLPSA 258
H+ D +TRVKLPSGAKKV+PS+
Sbjct: 138 HDVDTGKTRVKLPSGAKKVVPSS 160
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 154 bits (373), Expect = 1e-38
Identities = 66/84 (78%), Positives = 77/84 (91%)
Frame = +3
Query: 255 SNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIG 434
S RG+VGIVAGGGRIDKP+LKAGRA+HKY+VKRNCWP RGVAMNPV+HPHGGGNHQH+G
Sbjct: 160 SARGVVGIVAGGGRIDKPLLKAGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVG 219
Query: 435 KASTVKRGTSAGRKVGLIAARRTG 506
++TV R ++ G+KVGLIAARRTG
Sbjct: 220 HSTTVPRQSAPGQKVGLIAARRTG 243
Score = 128 bits (309), Expect = 6e-31
Identities = 55/83 (66%), Positives = 68/83 (81%)
Frame = +1
Query: 10 SRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 189
+ +YTGQFVYCGK A L VGNV+PVG MPEGTI+ N+EEK GDRG L R+SGN+ ++G
Sbjct: 78 TEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAGDRGALGRSSGNYVIIVG 137
Query: 190 HNPDAKRTRVKLPSGAKKVLPSA 258
H+ D +TRVKLPSGAKKV+PS+
Sbjct: 138 HDVDTGKTRVKLPSGAKKVVPSS 160
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 41.1 bits (92), Expect = 1e-04
Identities = 16/24 (66%), Positives = 18/24 (75%)
Frame = +3
Query: 363 PYVRGVAMNPVEHPHGGGNHQHIG 434
P VRG AMNP +HPHGGG + IG
Sbjct: 256 PTVRGTAMNPCDHPHGGGGGKSIG 279
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 30.3 bits (65), Expect = 0.21
Identities = 13/39 (33%), Positives = 20/39 (51%)
Frame = -3
Query: 322 PAFKIGLSIRPPPATIPTMPLLLMAEPSWLQTVALLLYA 206
P K+GL+ PP + M L W + VAL+L++
Sbjct: 255 PTTKVGLNDWVPPTVLYLMSLFFSTSGGWTEKVALILWS 293
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 29.9 bits (64), Expect = 0.28
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 548 FRSPSLYRSCLHESSGPASSNKTNFATSRCSSLDS 444
F SP+LY H+ GP + + +A C+S+ S
Sbjct: 533 FNSPTLYTKPFHQRDGPKPTGASQWAAVACTSVVS 567
>SPCC18.01c |adg3|SPCC74.07c|beta-glucosidase Adg3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1131
Score = 29.1 bits (62), Expect = 0.49
Identities = 33/133 (24%), Positives = 58/133 (43%), Gaps = 5/133 (3%)
Frame = -2
Query: 542 SPSLYRSCLHESS--GPASSNKTNFATSRCSSLDSGSLTYMLMVTTTVRMLY-RVHG-NT 375
S + S L SS G ASS+ + A SS +GSL Y T V ++ R G ++
Sbjct: 424 SSTFVTSLLRRSSIDGSASSSSASLAVPTVSSSTTGSLHYKTTTTVWVTEVFTRYLGDDS 483
Query: 374 TYIWPAVTFDLVLVVCPSSFQ-NRFVNTSTSSNNTDHASVADGRTFLAPDGSFTLVRLAS 198
T + + F +S Q + + S+S++N +S + + G+ + L+S
Sbjct: 484 TPVTSSSIFSTATEATDTSVQTSSAIYDSSSTSNIQSSS----SVYASSTGALSSNSLSS 539
Query: 197 GLCPITVAKFPEA 159
++ + P A
Sbjct: 540 STSSVSTSYIPNA 552
>SPAC1F12.10c |||NADPH-hemoprotein reductase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 147
Score = 28.3 bits (60), Expect = 0.85
Identities = 11/31 (35%), Positives = 16/31 (51%)
Frame = +3
Query: 297 IDKPILKAGRAYHKYKVKRNCWPYVRGVAMN 389
++KPI K+K K +CW +RG N
Sbjct: 68 VEKPIPVTKEELAKHKTKEDCWIAIRGKVYN 98
>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1328
Score = 26.6 bits (56), Expect = 2.6
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Frame = -2
Query: 299 NTSTSSNNTDHASVADGRTFLAPDGSFT-LVRLASGLCPITVAK 171
N ++++NN ++ +V + +TF P S T V S + P + K
Sbjct: 322 NNNSNNNNGNNGTVPNAKTFFTPPSSITQQVPFPSTIIPESTVK 365
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 3.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +1
Query: 187 GHNPDAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLTNLF 312
G+N D K LP G + L SAT + ++ L+ V N F
Sbjct: 180 GYNEDMKTLSRSLPRGTQSFLMSATLSKNIASLQKLVCRNPF 221
>SPCC1682.02c |mcm3||MCM complex subunit Mcm3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 879
Score = 25.8 bits (54), Expect = 4.5
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Frame = -2
Query: 380 NTTYIWPAVTFDLVLVVCPSSFQNRFVNTSTSSNNTDHASVADGRTFLAP--DGSFTLVR 207
NT WP+ L + +R +NT TS + ASV++ T P S + R
Sbjct: 759 NTQLSWPSTHSTLPATSRELASSDRNINTGTSVASEVSASVSEQSTVSLPREKMSVFMAR 818
Query: 206 LAS 198
LAS
Sbjct: 819 LAS 821
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 4.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -2
Query: 146 PLSPIFSSRLHTMVPSGIAPTGITFPTSRVAFF 48
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
>SPAC14C4.08 |mug5||meiotically upregulated gene
Mug5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 179
Score = 25.4 bits (53), Expect = 6.0
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 548 FRSPSLYRSCLHESSGPASSNKTNFATSRC-SSLDSGSLTYMLMVTTTVRML 396
F+ P Y +H + + +N C LD+G+L ML+ T+RM+
Sbjct: 41 FKLPKEYDVSIHALTILMKRHLSNMEPIDCYQDLDTGTLQTMLIFCCTLRMI 92
>SPAC9.12c |atp12||F1-ATPase chaperone Atp12 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 287
Score = 25.4 bits (53), Expect = 6.0
Identities = 19/69 (27%), Positives = 28/69 (40%), Gaps = 4/69 (5%)
Frame = -2
Query: 320 SFQNRFVNTSTSSNNTDHASVADGRTFLAPDGSFTLV----RLASGLCPITVAKFPEARA 153
SF+ + NT+T N + DGR +P G V L + L + + P
Sbjct: 37 SFRRFWKNTATKIQNGEVLIQLDGRNLKSPSGKIVKVPKEMELLAHLIALEWDRLPSTSV 96
Query: 152 RRPLSPIFS 126
R+ PI S
Sbjct: 97 RQHNLPITS 105
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 25.4 bits (53), Expect = 6.0
Identities = 14/48 (29%), Positives = 22/48 (45%)
Frame = -2
Query: 302 VNTSTSSNNTDHASVADGRTFLAPDGSFTLVRLASGLCPITVAKFPEA 159
+N S + D +S + L DG+F LV G+C T+ +A
Sbjct: 96 INLIDSPGHVDFSSEVSSASRLC-DGAFVLVDAVEGVCSQTITVLRQA 142
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 25.0 bits (52), Expect = 7.9
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 305 FVNTSTSSNNTDHASVADGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFS 126
F N + T AS A+ F P F +L SGL V+ +P+ + +P
Sbjct: 242 FPNLPATVPITQAASTANA--FQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSF 299
Query: 125 SRL 117
SRL
Sbjct: 300 SRL 302
>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
Mok13|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2358
Score = 25.0 bits (52), Expect = 7.9
Identities = 14/51 (27%), Positives = 21/51 (41%)
Frame = -3
Query: 373 RTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLLLMAEPSWLQTVA 221
R Y LR Y+ P F+ S P PA + + + +W Q +A
Sbjct: 1211 RVYSHNLRNITYILLEAPVFRKQTSAEPYPARMDDLSSAIFYS-AWNQCIA 1260
>SPAC1B3.08 |||COP9 signalosome complex subunit 12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 423
Score = 25.0 bits (52), Expect = 7.9
Identities = 21/69 (30%), Positives = 32/69 (46%), Gaps = 9/69 (13%)
Frame = +1
Query: 7 CSRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGT---------IVCNLEEKMGDRGRLAR 159
C R+L+ ++ CGK L V +V + GT I+ N+ K RG ++R
Sbjct: 346 CIRNLFRKTWIICGKSTRLPV-SVFQIALQVAGTDLPKLHVEAILANMISKGYMRGYISR 404
Query: 160 ASGNFATVI 186
NF TV+
Sbjct: 405 ---NFETVV 410
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,542,858
Number of Sequences: 5004
Number of extensions: 54606
Number of successful extensions: 194
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 194
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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