Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30565
(576 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0812 + 23383704-23384143,23384902-23385247 153 1e-37
06_01_0811 - 6113491-6113925,6114079-6114185,6114569-6114788,611... 33 0.16
11_06_0325 + 22376195-22377001,22377136-22377525,22377638-223777... 30 1.1
06_02_0282 + 13720419-13720985 30 1.5
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 29 2.0
02_05_0812 + 31942591-31942758,31943415-31943491,31944169-319443... 29 3.5
01_07_0112 - 41149461-41151674,41151688-41153265,41154344-411555... 29 3.5
01_01_0841 - 6564029-6564348,6564654-6564686,6564793-6565450,656... 29 3.5
08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167 28 4.6
03_05_1002 - 29594462-29594581,29594686-29594781,29594857-295949... 28 4.6
02_05_0058 + 25478274-25478421,25478963-25479142,25479714-254800... 28 4.6
11_06_0377 - 22900042-22900452,22900527-22902236 27 8.1
06_02_0045 + 10927561-10927614,10927693-10928052 27 8.1
>12_02_0812 + 23383704-23384143,23384902-23385247
Length = 261
Score = 153 bits (371), Expect = 1e-37
Identities = 68/85 (80%), Positives = 74/85 (87%)
Frame = +3
Query: 255 SNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIG 434
S R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG
Sbjct: 161 SCRAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIG 220
Query: 435 KASTVKRGTSAGRKVGLIAARRTGR 509
ASTV+R G+KVGLIAARRTGR
Sbjct: 221 HASTVRRDAPPGQKVGLIAARRTGR 245
Score = 124 bits (300), Expect = 4e-29
Identities = 51/86 (59%), Positives = 70/86 (81%)
Frame = +1
Query: 10 SRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 189
+ +YTGQFVYCG++ATL +GNV+P+ ++PEG +VCN+E +GDRG ARASG++A VI
Sbjct: 79 AEGMYTGQFVYCGRRATLSIGNVLPIRSVPEGAVVCNVEHHVGDRGVFARASGDYAIVIS 138
Query: 190 HNPDAKRTRVKLPSGAKKVLPSATEA 267
HNPD +R+KLPSGAKK++PS+ A
Sbjct: 139 HNPDNGTSRIKLPSGAKKIVPSSCRA 164
>06_01_0811 -
6113491-6113925,6114079-6114185,6114569-6114788,
6115112-6115199,6115301-6115431,6115924-6116099,
6116465-6116529,6117014-6117094,6117219-6117358,
6117446-6117532,6117614-6117827,6118102-6118260,
6118860-6118936,6119629-6119796
Length = 715
Score = 33.1 bits (72), Expect = 0.16
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +2
Query: 284 WRWTY*QTYFESWKGIPQVQG 346
W WTY T+F SW +P +QG
Sbjct: 70 WSWTYWSTFFLSWSIVPTLQG 90
>11_06_0325 +
22376195-22377001,22377136-22377525,22377638-22377778,
22377888-22378067,22378268-22378447,22378536-22378637,
22378768-22378896,22379318-22379422,22379528-22379623
Length = 709
Score = 30.3 bits (65), Expect = 1.1
Identities = 23/63 (36%), Positives = 30/63 (47%)
Frame = +1
Query: 124 EEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLT 303
EEK+ + L G +IG N K T +KL G +K T+ VLL E +VL
Sbjct: 445 EEKLFNNANLIVERGEKIAIIGPNGCGKSTLLKLILGMEK-----TQGGEVLLGEHNVLP 499
Query: 304 NLF 312
N F
Sbjct: 500 NYF 502
>06_02_0282 + 13720419-13720985
Length = 188
Score = 29.9 bits (64), Expect = 1.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 399 HPHGGGNHQHIGKASTVKRGTSAGRKVGLIAARRTG 506
+PHGGG H + +R G + +AARR G
Sbjct: 47 NPHGGGGHAPLPPPQNPRRPNLVGAEEVAVAARRRG 82
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 29.5 bits (63), Expect = 2.0
Identities = 9/10 (90%), Positives = 9/10 (90%)
Frame = +3
Query: 162 LWKLRHCDWT 191
LWK RHCDWT
Sbjct: 73 LWKCRHCDWT 82
>02_05_0812 +
31942591-31942758,31943415-31943491,31944169-31944327,
31944559-31944772,31944849-31944935,31945022-31945161,
31945380-31945460,31945948-31946012,31946219-31946394,
31947212-31947342,31947438-31947525,31947671-31947884,
31948206-31948312,31948456-31948953
Length = 734
Score = 28.7 bits (61), Expect = 3.5
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 284 WRWTY*QTYFESWKGIPQVQG 346
W W+Y T+ +W +P +QG
Sbjct: 70 WSWSYWSTFILTWAVVPTIQG 90
>01_07_0112 -
41149461-41151674,41151688-41153265,41154344-41155507,
41155807-41156293,41156603-41156759,41157303-41157378
Length = 1891
Score = 28.7 bits (61), Expect = 3.5
Identities = 9/30 (30%), Positives = 14/30 (46%)
Frame = -3
Query: 193 CVQSQWRSFQRHVPDDLYHPFSLQDCTQWY 104
C W++ H+P L H + +C WY
Sbjct: 73 CSCGLWKATTHHLPSALCHGLNYVNCAMWY 102
>01_01_0841 -
6564029-6564348,6564654-6564686,6564793-6565450,
6565530-6565694,6565789-6565878,6565982-6566182,
6566525-6566737,6566835-6567077
Length = 640
Score = 28.7 bits (61), Expect = 3.5
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +3
Query: 375 GVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGRKVG 482
G+A N PHG NHQH ++ T++ K G
Sbjct: 524 GIAANHTSLPHGA-NHQHASPVEIEQKATASWEKDG 558
>08_02_0253 - 14869109-14869146,14869424-14869710,14869848-14870167
Length = 214
Score = 28.3 bits (60), Expect = 4.6
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = -3
Query: 391 GFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLL 257
G + P +G + ++T +L LP ++ L +R PT+PLL
Sbjct: 91 GLLRRPSRHGSRQQVTWFLETYLPGTELTLPLRYKEFPGPTLPLL 135
>03_05_1002 -
29594462-29594581,29594686-29594781,29594857-29594916,
29595574-29595618,29595956-29596070,29596200-29596246,
29596529-29596822
Length = 258
Score = 28.3 bits (60), Expect = 4.6
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = -3
Query: 520 ASTNLPVLRAAIRPTLRPADVP 455
AST+LPV R ++ P+ RPA P
Sbjct: 6 ASTSLPVPRVSLPPSARPAAAP 27
>02_05_0058 +
25478274-25478421,25478963-25479142,25479714-25480007,
25480261-25480564,25480672-25480751,25480765-25480934
Length = 391
Score = 28.3 bits (60), Expect = 4.6
Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +1
Query: 118 NLEEKMGDRGRLARASGNFATVIGH--NPDAKRTRVKLPSGAKKVLPSATE 264
N +EK+ D G +ARA +F V+GH P+ VK S SA E
Sbjct: 329 NTKEKLHDLGEIARAKFDF-DVVGHYARPEVLSLTVKTESKLPVSFTSAAE 378
>11_06_0377 - 22900042-22900452,22900527-22902236
Length = 706
Score = 27.5 bits (58), Expect = 8.1
Identities = 18/57 (31%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
Frame = +1
Query: 55 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRL-ARASGNFATVIGHNPDAKRTRVK 222
A L+ G P+G + E VC L + D R+ A +G + G PD + RV+
Sbjct: 373 AALDDGEERPLGGLVEELFVCRLGD--DDEVRVGANHNGEGRRLRGPRPDGEEARVR 427
>06_02_0045 + 10927561-10927614,10927693-10928052
Length = 137
Score = 27.5 bits (58), Expect = 8.1
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +3
Query: 408 GGGNHQHIGKASTVKRGTSAGRKVGLIAARRTG 506
GGG H + + V+ T AGR V +A R G
Sbjct: 45 GGGGHVQLVRTLVVRAKTRAGRSVYEVAVRMGG 77
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,795,415
Number of Sequences: 37544
Number of extensions: 407846
Number of successful extensions: 1440
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1404
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1440
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -