Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30565
(576 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.) 165 2e-41
SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05) 136 9e-33
SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44) 38 0.006
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 29 3.6
SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.6
SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.8
SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.3
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_19257| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 260
Score = 165 bits (402), Expect = 2e-41
Identities = 74/84 (88%), Positives = 77/84 (91%)
Frame = +3
Query: 255 SNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIG 434
SNR +VGIVAGGGRIDKP+LKAGRAYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG
Sbjct: 161 SNRALVGIVAGGGRIDKPMLKAGRAYHKYKAKRNCWPRVRGVAMNPVEHPHGGGNHQHIG 220
Query: 435 KASTVKRGTSAGRKVGLIAARRTG 506
STV+R T AGRKVGLIAARRTG
Sbjct: 221 HPSTVRRDTPAGRKVGLIAARRTG 244
Score = 136 bits (330), Expect = 9e-33
Identities = 59/86 (68%), Positives = 72/86 (83%)
Frame = +1
Query: 10 SRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 189
+ +YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI
Sbjct: 79 TEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVIS 138
Query: 190 HNPDAKRTRVKLPSGAKKVLPSATEA 267
HN + KRTRVKLPSG KKV+PS+ A
Sbjct: 139 HNVEKKRTRVKLPSGIKKVIPSSNRA 164
>SB_42692| Best HMM Match : Ribosomal_L2_C (HMM E-Value=4.9e-05)
Length = 123
Score = 136 bits (330), Expect = 9e-33
Identities = 59/86 (68%), Positives = 72/86 (83%)
Frame = +1
Query: 10 SRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 189
+ +YTGQF+YCGKKA L++GN +PVG MPEGTI+ ++EEK GDRGRLAR SGN+ATVI
Sbjct: 37 TEGMYTGQFIYCGKKAALQIGNCLPVGIMPEGTIISSVEEKTGDRGRLARTSGNYATVIS 96
Query: 190 HNPDAKRTRVKLPSGAKKVLPSATEA 267
HN + KRTRVKLPSG KKV+PS+ A
Sbjct: 97 HNVEKKRTRVKLPSGIKKVIPSSNRA 122
>SB_43058| Best HMM Match : Ribosomal_L2_C (HMM E-Value=8.26766e-44)
Length = 222
Score = 37.9 bits (84), Expect = 0.006
Identities = 24/67 (35%), Positives = 37/67 (55%)
Frame = +1
Query: 55 ATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSG 234
A L+ G+ P+ +P GT+V N+E G +LARA+G A +I + V+LPS
Sbjct: 110 ALLKPGDAYPLCFLPIGTVVHNIELYPGKGAQLARAAGTSAQLIRKTNET--AVVRLPSK 167
Query: 235 AKKVLPS 255
+K + S
Sbjct: 168 VEKEVSS 174
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 28.7 bits (61), Expect = 3.6
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 322 PAFKIGLSIRPPPATIPTMPLLLMAEPSWLQTVA 221
P+F L PPP + ++PLLL A P LQ+ A
Sbjct: 594 PSFHHNLRPTPPPLPL-SIPLLLQATPPHLQSTA 626
>SB_8609| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 985
Score = 28.7 bits (61), Expect = 3.6
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +3
Query: 225 TVWSQEGSAISNRGMVGIVAGGGRIDKPILKAGRAYHKYKVKR--NCWPY 368
T W S ISNRGM + G P + + A+ K+ +K CW +
Sbjct: 428 TDWLNVNSPISNRGMFIDMIGDSMFTAPAVHSADAFIKHGLKTYFYCWEH 477
>SB_39055| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 448
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/65 (23%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
Frame = -1
Query: 210 TLSIRIVSNHSGEVSRGTCQTTSITHFLFKIAHNG--TLRHSSNRHHISNFKSCFLSTIN 37
T SI ++ + + + GTC+ + FK+ H + H + H ++N C + ++
Sbjct: 76 THSILVLLSAAACAANGTCEEPRRRNTFFKLKHKDRMLIDHVISSHDVTNPIHCSMECLS 135
Query: 36 KLACV 22
CV
Sbjct: 136 NQRCV 140
>SB_33652| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 342
Score = 27.9 bits (59), Expect = 6.3
Identities = 16/54 (29%), Positives = 24/54 (44%)
Frame = -3
Query: 487 IRPTLRPADVPLLTVEALPIC*WLPPP*GCSTGFMATPRTYGQQLRLTLYLWYA 326
IRP + V L V + + WLP + + P Y +R TL+L Y+
Sbjct: 222 IRPRDKELGVALFIVTVVSLLTWLPDAVVLNLDSVLAPAQYKHAVRSTLFLRYS 275
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
Frame = +1
Query: 70 GNVMPVGAMPEGTIVCNLEEKMGDRGRLAR-ASGNFATVIG 189
G+ PV +P G +C + +G R AR G F ++ G
Sbjct: 737 GHSKPVDGLPRGDAICGCPKAIGRRHARARLLEGRFLSISG 777
>SB_15535| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 837
Score = 27.5 bits (58), Expect = 8.3
Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
Frame = -2
Query: 323 SSFQNRFVNTSTSSNNTDHASVADGRTFLAP--DGSFTLVRLASGLCPI 183
S + N ++ + + ++ ++ G FL G FTLV + LCP+
Sbjct: 371 SQYMNEVISPNVFGSKSEVKDISGGCVFLITRCHGGFTLVYEVANLCPV 419
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,819,479
Number of Sequences: 59808
Number of extensions: 444543
Number of successful extensions: 1291
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1285
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1373676929
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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