Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30565
         (576 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    25   0.54 
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    24   0.94 
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   1.6  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    22   5.0  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.6  
DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channe...    21   8.7  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.7  

>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 25.0 bits (52), Expect = 0.54
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +1

Query: 184 IGHNPDAKRTRVKLPSGAKKVLPSATEAWSVLLLE 288
           IG+  + K+TR  LP+G +KVL    +   VL+++
Sbjct: 57  IGYGSN-KKTRHMLPTGFRKVLVHNVKELEVLMMQ 90


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 24.2 bits (50), Expect = 0.94
 Identities = 13/37 (35%), Positives = 17/37 (45%), Gaps = 1/37 (2%)
 Frame = -2

Query: 551 KFRSPSLYRSC-LHESSGPASSNKTNFATSRCSSLDS 444
           K    +L+ S  LHES G     + N    R  S+DS
Sbjct: 47  KIEKQNLHESDDLHESDGRVGGKRRNILLRRTDSMDS 83


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 135 HFLFKIAHNGTLRHSSNRHHI 73
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 135 HFLFKIAHNGTLRHSSNRHHI 73
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 135 HFLFKIAHNGTLRHSSNRHHI 73
           HF  +I  NGT+ +   RH I
Sbjct: 214 HFALRIYRNGTVNYLMRRHLI 234


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = -1

Query: 135 HFLFKIAHNGTLRHSSNRHHI 73
           HF  +I  NGT+ +   RH I
Sbjct: 163 HFALRIYRNGTVNYLMRRHLI 183


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/28 (32%), Positives = 17/28 (60%)
 Frame = +3

Query: 480 GLIAARRTGRFVEARPIQRRRPKFIIKS 563
           GL++    G + E RP++RR  + + K+
Sbjct: 317 GLVSDTALGCWNENRPLKRRNIEIVAKN 344


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.6
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = -2

Query: 539 PSLYRSCLHESSGPASSNKT 480
           PS+ RS +HE S  A S+++
Sbjct: 59  PSIDRSSIHEESYLAESSRS 78


>DQ667184-1|ABG75736.1|  489|Apis mellifera GABA-gated ion channel
           protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 443 GSLTYMLMVTTTVRMLYRVH 384
           GS+TY +  TTT+  +  +H
Sbjct: 147 GSVTYGMRFTTTLACMMDLH 166


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.7
 Identities = 5/14 (35%), Positives = 10/14 (71%)
 Frame = +2

Query: 341 QGQT*LLAICTWCC 382
           +G+  +++ C WCC
Sbjct: 3   KGRHVVMSCCCWCC 16


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 178,082
Number of Sequences: 438
Number of extensions: 4296
Number of successful extensions: 14
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16626408
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)