Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30565
(576 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) riboso... 153 8e-38
At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) riboso... 153 1e-37
At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A) 149 2e-36
At4g14250.1 68417.m02198 UBX domain-containing protein low simil... 46 2e-05
At2g44065.2 68415.m05480 ribosomal protein L2 family protein sim... 44 7e-05
At2g44065.1 68415.m05479 ribosomal protein L2 family protein sim... 44 7e-05
At2g41230.1 68415.m05091 expressed protein 32 0.24
At4g33410.1 68417.m04748 signal peptide peptidase family protein... 31 0.73
At3g45860.1 68416.m04963 receptor-like protein kinase, putative ... 29 1.7
At5g52600.1 68418.m06531 myb family transcription factor (MYB82)... 29 2.9
At5g65290.1 68418.m08212 LMBR1 integral membrane family protein ... 28 3.9
At5g10630.1 68418.m01231 elongation factor 1-alpha, putative / E... 28 5.1
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 27 6.8
At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp... 27 6.8
At3g31980.1 68416.m04050 hypothetical protein low similarity to ... 27 9.0
At2g40770.1 68415.m05030 SNF2 domain-containing protein / helica... 27 9.0
At1g53170.1 68414.m06025 ethylene-responsive element-binding fac... 27 9.0
>At4g36130.1 68417.m05142 60S ribosomal protein L8 (RPL8C) ribosomal
protein L8, cytosolic, tomato, PIR1:R5TOL8
Length = 258
Score = 153 bits (371), Expect = 8e-38
Identities = 67/83 (80%), Positives = 73/83 (87%)
Frame = +3
Query: 261 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 440
R M+G VAGGGR +KP+LKAG AYHKY+VKRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNCWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 441 STVKRGTSAGRKVGLIAARRTGR 509
STV+R G+KVGLIAARRTGR
Sbjct: 223 STVRRDAPPGKKVGLIAARRTGR 245
Score = 123 bits (296), Expect = 1e-28
Identities = 51/86 (59%), Positives = 69/86 (80%)
Frame = +1
Query: 10 SRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 189
+ +YTGQF+YCGKKATL VGNV+P+ ++PEG ++CN+E +GDRG ARASG++A VI
Sbjct: 79 AEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVICNVEHHVGDRGVFARASGDYAIVIA 138
Query: 190 HNPDAKRTRVKLPSGAKKVLPSATEA 267
HNPD +R+KLPSG+KK++PS A
Sbjct: 139 HNPDNDTSRIKLPSGSKKIVPSGCRA 164
>At3g51190.1 68416.m05604 60S ribosomal protein L8 (RPL8B) ribosomal
protein L8, cytosolic - Arabidopsis thaliana, PIR:T04582
Length = 260
Score = 153 bits (370), Expect = 1e-37
Identities = 68/83 (81%), Positives = 71/83 (85%)
Frame = +3
Query: 261 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 440
R M+G VAGGGR +KP LKAG AYHKYK KRNCWP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 164 RAMIGQVAGGGRTEKPFLKAGNAYHKYKAKRNCWPVVRGVAMNPVEHPHGGGNHQHIGHA 223
Query: 441 STVKRGTSAGRKVGLIAARRTGR 509
STV+R SAG KVG IAARRTGR
Sbjct: 224 STVRRDKSAGAKVGQIAARRTGR 246
Score = 129 bits (311), Expect = 1e-30
Identities = 54/86 (62%), Positives = 72/86 (83%)
Frame = +1
Query: 10 SRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 189
+ +YTGQ++YCGKKA L VGNV+P+G++PEG ++CN+E +GDRG LARASG++A VI
Sbjct: 80 AEGMYTGQYLYCGKKANLMVGNVLPLGSIPEGAVICNVELHVGDRGALARASGDYAIVIA 139
Query: 190 HNPDAKRTRVKLPSGAKKVLPSATEA 267
HNP++ TRVKLPSG+KK+LPSA A
Sbjct: 140 HNPESNTTRVKLPSGSKKILPSACRA 165
>At2g18020.1 68415.m02094 60S ribosomal protein L8 (RPL8A)
Length = 258
Score = 149 bits (360), Expect = 2e-36
Identities = 66/83 (79%), Positives = 72/83 (86%)
Frame = +3
Query: 261 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKA 440
R M+G VAGGGR +KP+LKAG AYHKY+VKRN WP VRGVAMNPVEHPHGGGNHQHIG A
Sbjct: 163 RAMIGQVAGGGRTEKPMLKAGNAYHKYRVKRNSWPKVRGVAMNPVEHPHGGGNHQHIGHA 222
Query: 441 STVKRGTSAGRKVGLIAARRTGR 509
STV+R G+KVGLIAARRTGR
Sbjct: 223 STVRRDAPPGQKVGLIAARRTGR 245
Score = 128 bits (308), Expect = 3e-30
Identities = 54/86 (62%), Positives = 71/86 (82%)
Frame = +1
Query: 10 SRSLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIG 189
+ +YTGQF+YCGKKATL VGNV+P+ ++PEG +VCN+E +GDRG LARASG++A VI
Sbjct: 79 AEGMYTGQFLYCGKKATLVVGNVLPLRSIPEGAVVCNVEHHVGDRGVLARASGDYAIVIA 138
Query: 190 HNPDAKRTRVKLPSGAKKVLPSATEA 267
HNPD+ TR+KLPSG+KK++PS A
Sbjct: 139 HNPDSDTTRIKLPSGSKKIVPSGCRA 164
>At4g14250.1 68417.m02198 UBX domain-containing protein low
similarity to 60S ribosomal protein L2 [Nicotiana
tabacum] GI:9230281; contains Pfam profile PF00789: UBX
domain
Length = 724
Score = 45.6 bits (103), Expect = 2e-05
Identities = 20/27 (74%), Positives = 21/27 (77%), Gaps = 1/27 (3%)
Frame = +3
Query: 336 KYKVKRNCWPYVRGVAM-NPVEHPHGG 413
K +KRN W VRGVAM NPVEHPHGG
Sbjct: 411 KLMIKRNMWAKVRGVAMMNPVEHPHGG 437
>At2g44065.2 68415.m05480 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.0 bits (99), Expect = 7e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +1
Query: 67 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKK 243
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTK 116
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +3
Query: 261 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 416
R +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG
Sbjct: 123 RATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At2g44065.1 68415.m05479 ribosomal protein L2 family protein
similar to ribosomal protein L2 [Gossypium arboreum]
GI:17644114; contains Pfam profile PF03947: Ribosomal
Proteins L2, C-terminal domain
Length = 214
Score = 44.0 bits (99), Expect = 7e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Frame = +1
Query: 67 VGNVMPVGAMPEGTIVCNLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKK 243
+G+ MP+G M GTI+ N+E G ++ RA+G A ++ P + +KLPSG K
Sbjct: 59 IGSSMPLGMMRIGTIIHNIEMNPGQGAKMVRAAGTNAKIL-KEPAKGKCLIKLPSGDTK 116
Score = 41.5 bits (93), Expect = 4e-04
Identities = 23/52 (44%), Positives = 31/52 (59%)
Frame = +3
Query: 261 RGMVGIVAGGGRIDKPILKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGG 416
R +G V+ K + KAG++ ++ R P VRGVAMNP +HPHGGG
Sbjct: 123 RATIGTVSNPSHGTKKLYKAGQS--RWLGIR---PKVRGVAMNPCDHPHGGG 169
>At2g41230.1 68415.m05091 expressed protein
Length = 88
Score = 32.3 bits (70), Expect = 0.24
Identities = 23/55 (41%), Positives = 29/55 (52%)
Frame = -3
Query: 415 PPP*GCSTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMPLLLM 251
P P G + + T R+ L L+L L LP F L PPPAT+ +PLLLM
Sbjct: 14 PKPMGLNGSSLITARSVALLLFLSLLL-LILPPFLPPLP--PPPATLLLLPLLLM 65
>At4g33410.1 68417.m04748 signal peptide peptidase family protein
contains Pfam domain PF04258: Membrane protein of
unknown function (DUF435)
Length = 372
Score = 30.7 bits (66), Expect = 0.73
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = -3
Query: 340 YLWYALPAFKIGL--SIRPPPATIPTMPLLLMAEPSWLQTVALL 215
Y+WYALP + IGL ++ T P LL PS L V +
Sbjct: 301 YIWYALPGYAIGLVAALAAGVLTHSPQPALLYLVPSTLGPVIFM 344
>At3g45860.1 68416.m04963 receptor-like protein kinase, putative
similar to receptor-like protein kinase 4 (gi:13506745),
5 (gi:13506747), and 6 (gi:13506749) from Arabidopsis
thaliana; contains Pfam protein kinase domain PF00069
Length = 676
Score = 29.5 bits (63), Expect = 1.7
Identities = 17/49 (34%), Positives = 28/49 (57%)
Frame = -1
Query: 147 TSITHFLFKIAHNGTLRHSSNRHHISNFKSCFLSTINKLACVEASGAMK 1
+++T+ I NG SSN++ + F+ ST+N LA VEA+ + K
Sbjct: 137 STVTYDGSAILLNGANISSSNQNQVDEFRDLVSSTLN-LAAVEAANSSK 184
>At5g52600.1 68418.m06531 myb family transcription factor (MYB82)
contains Pfam profile: PF00249 myb-like DNA-binding
domain; identical to cDNA putative transcription factor
(MYB82) mRNA, partial cds GI:3941515
Length = 201
Score = 28.7 bits (61), Expect = 2.9
Identities = 16/54 (29%), Positives = 23/54 (42%)
Frame = +3
Query: 312 LKAGRAYHKYKVKRNCWPYVRGVAMNPVEHPHGGGNHQHIGKASTVKRGTSAGR 473
++ R K VKR W + + HG GN I + S +KRG + R
Sbjct: 1 MECKREEGKSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRSGLKRGGKSCR 54
>At5g65290.1 68418.m08212 LMBR1 integral membrane family protein
contains Pfam PF04791: LMBR1-like conserved region
Length = 733
Score = 28.3 bits (60), Expect = 3.9
Identities = 8/21 (38%), Positives = 13/21 (61%)
Frame = +2
Query: 284 WRWTY*QTYFESWKGIPQVQG 346
W W+Y T+ +W +P +QG
Sbjct: 74 WSWSYWSTFLLTWAVVPLIQG 94
>At5g10630.1 68418.m01231 elongation factor 1-alpha, putative /
EF-1-alpha, putative contains similarity to
SWISS-PROT:Q9YAV0 elongation factor 1-alpha (EF-1-alpha)
[Aeropyrum pernix]
Length = 667
Score = 27.9 bits (59), Expect = 5.1
Identities = 17/63 (26%), Positives = 30/63 (47%)
Frame = +1
Query: 169 NFATVIGHNPDAKRTRVKLPSGAKKVLPSATEAWSVLLLEVDVLTNLF*KLEGHTTSTRS 348
N ++IG ++ +++ P K P E W +L E D L+ L + GH S +S
Sbjct: 197 NKMSLIGETENSSDIKIRGPKSQSKHKP---EEWMLLDKESDALSQLNLAIVGHVDSGKS 253
Query: 349 NVT 357
++
Sbjct: 254 TLS 256
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 27.5 bits (58), Expect = 6.8
Identities = 12/38 (31%), Positives = 18/38 (47%)
Frame = -1
Query: 177 GEVSRGTCQTTSITHFLFKIAHNGTLRHSSNRHHISNF 64
G+V GTC +A +G +R N HH+ +F
Sbjct: 117 GDVVGGTCVNRGCVPSKALLAVSGRMRELQNEHHMKSF 154
>At1g14640.1 68414.m01740 SWAP (Suppressor-of-White-APricot)/surp
domain-containing protein similar to human splicing
factor GB:CAA59494 GI:899298 from [Homo sapiens];
contains Pfam profile PF01805: Surp module
Length = 735
Score = 27.5 bits (58), Expect = 6.8
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 418 LPPP*GCSTGFMATPRTYGQQLRLTLYLWYALPAFKIGLSIRPPPATIPTMP 263
+PPP G M P+ YGQ LP +G+ PP A +P P
Sbjct: 611 VPPPPGSQFSHMQVPQPYGQ-----------LPPLSMGMMQPPPMAEMPPPP 651
>At3g31980.1 68416.m04050 hypothetical protein low similarity to
SP|P07271 DNA repair and recombination protein PIF1,
mitochondrial precursor {Saccharomyces cerevisiae}
Length = 1099
Score = 27.1 bits (57), Expect = 9.0
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 216 SKATVWSQEGSAISNRGMVGIVAGGGRIDKPILKAGRAYH 335
SK +W +A+ RG++ + I +L+ GR H
Sbjct: 650 SKTFMWKTLSAAVRMRGLISVNVASSGIASLLLQGGRTAH 689
>At2g40770.1 68415.m05030 SNF2 domain-containing protein / helicase
domain-containing protein / zinc finger (C3HC4 type RING
finger) family protein low similarity to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00628: PHD-finger, PF00097: Zinc finger, C3HC4
type (RING finger)
Length = 1648
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = -3
Query: 202 HQDCVQSQWRSFQRHVPDDLYHPFSLQDCTQW 107
H+ Q WRS + HV D+L P ++C W
Sbjct: 667 HKFFKQVMWRSSKVHVADELQLP-PQEECVSW 697
>At1g53170.1 68414.m06025 ethylene-responsive element-binding factor
8 / ERF transcription factor 8 (ERF8) identical to ERF
transcription factor 8 GI:10567108 from [Arabidopsis
thaliana]
Length = 185
Score = 27.1 bits (57), Expect = 9.0
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 148 RLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSATE 264
R +A NF ++G +P T V P+ A+ + P E
Sbjct: 78 RGVKAKTNFGVIVGSSPTQSSTVVDSPTAARFITPPHLE 116
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,739,844
Number of Sequences: 28952
Number of extensions: 302483
Number of successful extensions: 974
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 935
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1121903184
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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