Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30564
         (479 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces...   125   4e-30
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   0.84 
SPBC649.05 |cut12|stf1|spindle pole body protein Cut12 |Schizosa...    27   1.1  
SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   3.4  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   4.5  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    25   4.5  
SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr 2|...    25   5.9  
SPBC31F10.10c |||zf-MYND type zinc finger protein|Schizosaccharo...    25   7.8  

>SPCC576.09 |rps20||40S ribosomal protein S20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 118

 Score =  125 bits (301), Expect = 4e-30
 Identities = 57/75 (76%), Positives = 68/75 (90%)
 Frame = +1

Query: 220 SQETEAACKGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 399
           +++ +   KGP R+PTKIL+ITTRKTP GEGSKTW+ ++MRIHKR+IDLHSPSEIVKQIT
Sbjct: 43  AKDKQLRVKGPVRLPTKILKITTRKTPNGEGSKTWETYEMRIHKRLIDLHSPSEIVKQIT 102

Query: 400 SINIEPGVEVEVTIA 444
           SI+IEPGVEVEVTIA
Sbjct: 103 SIHIEPGVEVEVTIA 117



 Score = 69.3 bits (162), Expect = 3e-13
 Identities = 32/46 (69%), Positives = 39/46 (84%)
 Frame = +2

Query: 116 EKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
           +K Q   S +HRIRITLTSRNVR+LEKVC+DL+N AK ++LRVKGP
Sbjct: 8   QKEQQIPSTVHRIRITLTSRNVRNLEKVCSDLVNRAKDKQLRVKGP 53


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 0.84
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +2

Query: 98   VSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVK 247
            +S   IEKP+A  SPIH       +  +R L+ V      GA++ +  VK
Sbjct: 891  LSSSLIEKPRASSSPIHH----ANNNGLRLLKDVLKKTYRGARENRSSVK 936


>SPBC649.05 |cut12|stf1|spindle pole body protein Cut12
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 548

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 89  AAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRS 187
           A V +  D+EKPQ +V+   R+   L S N R+
Sbjct: 491 ANVTTSADVEKPQVKVATSSRVDYDLKSPNQRT 523


>SPBC21C3.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 841

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = +1

Query: 337 MRIHKRVIDLHSPSEIVKQITSINIEPGV 423
           +R+H+R I L + S+ ++   + NIE G+
Sbjct: 406 LRVHERAIKLRTLSDSIRADVAENIEMGI 434


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/11 (81%), Positives = 10/11 (90%)
 Frame = +1

Query: 118 ETPGRGLPYSP 150
           ETPGR LP+SP
Sbjct: 166 ETPGRNLPFSP 176


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/21 (52%), Positives = 15/21 (71%)
 Frame = -2

Query: 70  IPAEINNFSIKNCSALNRRNL 8
           + +E+N+  IKN S LN RNL
Sbjct: 592 LESELNSSKIKNESLLNERNL 612


>SPBC1685.05 |||serine protease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 997

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = +1

Query: 274 LRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGVEVEVTI 441
           LR    KT  G G    +    ++  R+ DLH   E   +I ++ +  G+E+E+TI
Sbjct: 802 LRPLLHKTSLGVGDILLE-VNGKMITRLSDLHE-FETESEIKAVILRDGIEMEITI 855


>SPBC31F10.10c |||zf-MYND type zinc finger
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 574

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 289 RKTPCGEGSKTWDRFQM 339
           R +P   GSKTW+ FQ+
Sbjct: 427 RMSPLRSGSKTWNIFQL 443


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,943,108
Number of Sequences: 5004
Number of extensions: 38299
Number of successful extensions: 96
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)