Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30564
(479 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923 120 5e-28
10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514 118 2e-27
03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294 118 2e-27
03_02_0020 - 5045900-5046211,5046233-5046290,5046604-5047242,504... 35 0.030
03_06_0314 - 33077621-33077869,33078218-33078280,33079392-330794... 29 2.6
06_02_0345 + 14833838-14833997,14834095-14834552,14834633-148348... 28 4.5
01_06_1409 - 37111954-37112061,37112295-37112330,37112434-371124... 28 4.5
>06_01_0239 - 1819316-1819458,1820578-1820691,1820794-1820923
Length = 128
Score = 120 bits (290), Expect = 5e-28
Identities = 53/68 (77%), Positives = 62/68 (91%)
Frame = +1
Query: 244 KGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 423
KGP RMPTK+L ITTRK+PCGEG+ TWDRF+MR+HKRVIDL S +++VKQITSI IEPGV
Sbjct: 60 KGPVRMPTKVLHITTRKSPCGEGTNTWDRFEMRVHKRVIDLVSSADVVKQITSITIEPGV 119
Query: 424 EVEVTIAD 447
EVEVTI+D
Sbjct: 120 EVEVTISD 127
Score = 58.0 bits (134), Expect = 4e-09
Identities = 30/56 (53%), Positives = 40/56 (71%)
Frame = +2
Query: 86 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
A + SGK + EV HRIRITL+S++V++LEKVC DL+ GAK + L+VKGP
Sbjct: 9 APPMKSGKIGFESSQEVQ--HRIRITLSSKSVKNLEKVCGDLVKGAKDKSLKVKGP 62
>10_02_0040 + 4482853-4482988,4483111-4483224,4485372-4485514
Length = 130
Score = 118 bits (285), Expect = 2e-27
Identities = 53/76 (69%), Positives = 64/76 (84%)
Frame = +1
Query: 220 SQETEAACKGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 399
+++ + KGP R+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQIT
Sbjct: 54 AKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQIT 113
Query: 400 SINIEPGVEVEVTIAD 447
SI IEPGVEVEVTIAD
Sbjct: 114 SITIEPGVEVEVTIAD 129
Score = 63.7 bits (148), Expect = 7e-11
Identities = 29/56 (51%), Positives = 41/56 (73%)
Frame = +2
Query: 86 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
A + G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKGP
Sbjct: 9 AGGAMKGGKLGMEEARELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKGP 64
>03_02_0370 + 7853646-7853772,7854508-7854621,7855152-7855294
Length = 127
Score = 118 bits (285), Expect = 2e-27
Identities = 53/76 (69%), Positives = 64/76 (84%)
Frame = +1
Query: 220 SQETEAACKGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 399
+++ + KGP R+PTK+L ITTRK+PCGEG+ TWDRF+ RIHKRVIDL S ++VKQIT
Sbjct: 51 AKDKQLRVKGPVRIPTKVLHITTRKSPCGEGTNTWDRFEFRIHKRVIDLISSPDVVKQIT 110
Query: 400 SINIEPGVEVEVTIAD 447
SI IEPGVEVEVTIAD
Sbjct: 111 SITIEPGVEVEVTIAD 126
Score = 62.9 bits (146), Expect = 1e-10
Identities = 33/61 (54%), Positives = 44/61 (72%), Gaps = 4/61 (6%)
Frame = +2
Query: 83 MAAAVV----SGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKG 250
MAAA V G + +A ++RIRITL+S+NV++LEKVCADL+ GAK ++LRVKG
Sbjct: 1 MAAAAVYGGMKGGKLGVEEAHELQLNRIRITLSSKNVKNLEKVCADLVKGAKDKQLRVKG 60
Query: 251 P 253
P
Sbjct: 61 P 61
>03_02_0020 -
5045900-5046211,5046233-5046290,5046604-5047242,
5048475-5048515,5048672-5048728,5048952-5049140
Length = 431
Score = 35.1 bits (77), Expect = 0.030
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Frame = +1
Query: 220 SQETEAACKGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSP-SEIVKQI 396
++ T A GP +PTK +P + F++R H+R+ID+ P ++ + +
Sbjct: 358 AKTTNAKTMGPVPLPTKRRVYCVLNSPHVHKDSRF-HFEIRTHQRLIDIMYPTAQTIDSL 416
Query: 397 TSINIEPGVEVEVTI 441
+ + GV+VEV +
Sbjct: 417 MQLQLPAGVDVEVKL 431
Score = 27.5 bits (58), Expect = 6.0
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +2
Query: 134 VSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
++P +IRI L S V +E C +I AK + GP
Sbjct: 329 LAPKQKIRIKLRSYWVPLIEDSCKKIIEAAKTTNAKTMGP 368
>03_06_0314 -
33077621-33077869,33078218-33078280,33079392-33079449,
33079534-33079688,33079797-33080106,33080634-33080890,
33081280-33081359,33083888-33083948
Length = 410
Score = 28.7 bits (61), Expect = 2.6
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 178 CALTREGLC*PNQWSQETEAACKGPSRMPTKILRIT 285
C L EGL ++W++ A +GPS + + R T
Sbjct: 155 CRLAAEGLVTASKWARPGRAGTRGPSPLKQPLTRTT 190
>06_02_0345 +
14833838-14833997,14834095-14834552,14834633-14834870,
14834974-14835431,14836554-14836955
Length = 571
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/74 (28%), Positives = 25/74 (33%)
Frame = +1
Query: 151 HQDHSYFSQCALTREGLC*PNQWSQETEAACKGPSRMPTKILRITTRKTPCGEGSKTWDR 330
H S +CAL R+G +W ET C G P IL G D
Sbjct: 11 HHLQSTLFECALLRDGRAESFEWLFETFKNCMGNCPTPRCILTDQDPAMAIAVGRAFPDA 70
Query: 331 FQMRIHKRVIDLHS 372
+ID HS
Sbjct: 71 IHRLCRWHIIDGHS 84
>01_06_1409 -
37111954-37112061,37112295-37112330,37112434-37112498,
37112610-37112688,37112967-37113041,37113623-37114147
Length = 295
Score = 27.9 bits (59), Expect = 4.5
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Frame = +2
Query: 32 TIFD*KVVYLGRNSTSNMAAAVVSGKDIEK-PQAEVSPIHRIRITLTSRNVRSLEKVCAD 208
+I + K V L + N+ SG +I+ + V+ IHR R+TL +++ S
Sbjct: 215 SILEAKDVLLHAERSWNITLPGFSGDEIKLYKKPHVNDIHRERLTLIKKSMASESNAKGS 274
Query: 209 LINGAKKQKLRVKGPAA 259
A QK + P A
Sbjct: 275 AAQAAANQKNQTPKPPA 291
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,348,381
Number of Sequences: 37544
Number of extensions: 280962
Number of successful extensions: 661
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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