Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30564
         (479 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)             139   9e-34
SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)                 30   1.1  
SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)                      28   3.5  
SB_31673| Best HMM Match : rve (HMM E-Value=6.7e-30)                   27   6.1  
SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  
SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.0  

>SB_55959| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 100

 Score =  139 bits (337), Expect = 9e-34
 Identities = 64/77 (83%), Positives = 71/77 (92%)
 Frame = +1

Query: 220 SQETEAACKGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQIT 399
           ++E +   KGP RMPTK LRITTRKTPCGEGSKTWDR++MRIHKR+IDLHSPSEIVKQIT
Sbjct: 24  AKEKKLKVKGPVRMPTKFLRITTRKTPCGEGSKTWDRYEMRIHKRLIDLHSPSEIVKQIT 83

Query: 400 SINIEPGVEVEVTIADA 450
           SI+IEPGVEVEVTIADA
Sbjct: 84  SISIEPGVEVEVTIADA 100



 Score = 37.9 bits (84), Expect = 0.004
 Identities = 18/29 (62%), Positives = 23/29 (79%), Gaps = 2/29 (6%)
 Frame = +2

Query: 173 RNVRSLEKV--CADLINGAKKQKLRVKGP 253
           + VR+  KV  CADLI GAK++KL+VKGP
Sbjct: 6   KKVRTTRKVTVCADLIRGAKEKKLKVKGP 34


>SB_11738| Best HMM Match : SH3_2 (HMM E-Value=3.7e-32)
          Length = 2436

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +2

Query: 107 KDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCAD 208
           + + K Q E + IH + +T   ++VRSLE+ C +
Sbjct: 663 RQLHKIQEESTRIHHLAVTALEKDVRSLEQRCLE 696


>SB_9375| Best HMM Match : Sec6 (HMM E-Value=0.35)
          Length = 1049

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 19/47 (40%), Positives = 22/47 (46%)
 Frame = -3

Query: 471 FYWRLCLRVGDGHLNLYTGLDVN*GDLFHNFRGRV*VDHSLVDSHLK 331
           FY  L L V D    L  G+D    DLF   R    VD+SLV   +K
Sbjct: 405 FYSNLVLEVSDNETELVNGIDQLWDDLFVESRR---VDYSLVSVKMK 448


>SB_31673| Best HMM Match : rve (HMM E-Value=6.7e-30)
          Length = 426

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -2

Query: 340 ASENDPRSLNLHHKEFYGW*YAGSWLACGWALYTQL 233
           ASENDP   ++H+   Y     G W  C  A YT++
Sbjct: 151 ASENDPELQSVHYYISY-----GDWSQCKLAAYTRI 181


>SB_41095| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 561

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = -2

Query: 478 KNILLAALPTRRRWSPQP 425
           +N+++  LPT +RW P P
Sbjct: 180 RNVVIQRLPTSQRWQPYP 197


>SB_40712| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +1

Query: 256 RMPTKILRITT-RKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEI 384
           R+PT    + T +K PC     TW R +    KR + +H P+ +
Sbjct: 22  RVPTAFPSVATGKKYPCQRKKVTWSR-KKNPFKRRVPVHVPTSL 64


>SB_37931| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 361

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +2

Query: 74  TSNMAAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEK 196
           T N A+ ++S   + +PQA + P+H   I + SRN  ++ K
Sbjct: 306 TLNSASVILS---LAEPQAGILPVHPHSIEIASRNRDAIAK 343


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,097,387
Number of Sequences: 59808
Number of extensions: 327644
Number of successful extensions: 695
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 695
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1001731762
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)