Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30564
         (479 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal ...   137   6e-33
AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p pro...   137   6e-33
AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-P...   137   6e-33
AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p pro...   136   2e-32

>Y11119-1|CAA72004.1|  120|Drosophila melanogaster S20 ribosomal
           protein protein.
          Length = 120

 Score =  137 bits (332), Expect = 6e-33
 Identities = 63/68 (92%), Positives = 66/68 (97%)
 Frame = +1

Query: 244 KGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 423
           KGP RMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGV
Sbjct: 53  KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGV 112

Query: 424 EVEVTIAD 447
           EVEVTIA+
Sbjct: 113 EVEVTIAN 120



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 38/50 (76%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGP
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGP 55


>AY071742-1|AAL49364.1|  120|Drosophila melanogaster RH47995p
           protein.
          Length = 120

 Score =  137 bits (332), Expect = 6e-33
 Identities = 63/68 (92%), Positives = 66/68 (97%)
 Frame = +1

Query: 244 KGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 423
           KGP RMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGV
Sbjct: 53  KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGV 112

Query: 424 EVEVTIAD 447
           EVEVTIA+
Sbjct: 113 EVEVTIAN 120



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 38/50 (76%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGP
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGP 55


>AE014297-2870|AAF55809.1|  120|Drosophila melanogaster CG15693-PA
           protein.
          Length = 120

 Score =  137 bits (332), Expect = 6e-33
 Identities = 63/68 (92%), Positives = 66/68 (97%)
 Frame = +1

Query: 244 KGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 423
           KGP RMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGV
Sbjct: 53  KGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGV 112

Query: 424 EVEVTIAD 447
           EVEVTIA+
Sbjct: 113 EVEVTIAN 120



 Score = 78.2 bits (184), Expect = 5e-15
 Identities = 38/50 (76%), Positives = 41/50 (82%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
           KDIEKP   + + +HRIRITLTSRNVRSLE VC DLINGAK Q LRVKGP
Sbjct: 6   KDIEKPHVGDSASVHRIRITLTSRNVRSLENVCRDLINGAKNQNLRVKGP 55


>AY071353-1|AAL48975.1|  120|Drosophila melanogaster RE38972p
           protein.
          Length = 120

 Score =  136 bits (328), Expect = 2e-32
 Identities = 62/68 (91%), Positives = 66/68 (97%)
 Frame = +1

Query: 244 KGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 423
           +GP RMPTK LRITTRKTPCGEGSKTWDRFQMRIHKR+IDLHSPSEIVK+ITSINIEPGV
Sbjct: 53  EGPVRMPTKTLRITTRKTPCGEGSKTWDRFQMRIHKRIIDLHSPSEIVKKITSINIEPGV 112

Query: 424 EVEVTIAD 447
           EVEVTIA+
Sbjct: 113 EVEVTIAN 120



 Score = 73.3 bits (172), Expect = 2e-13
 Identities = 36/50 (72%), Positives = 40/50 (80%), Gaps = 1/50 (2%)
 Frame = +2

Query: 107 KDIEKPQA-EVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
           KDIEKP   + + +H IRITLTSRNVRSLE VC DLINGAK Q LRV+GP
Sbjct: 6   KDIEKPHVGDSASVHCIRITLTSRNVRSLENVCRDLINGAKNQNLRVEGP 55


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,128,847
Number of Sequences: 53049
Number of extensions: 474230
Number of successful extensions: 1216
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1216
length of database: 24,988,368
effective HSP length: 79
effective length of database: 20,797,497
effective search space used: 1663799760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)