Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30564
         (479 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical...   128   2e-30
AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical ...    28   3.1  
AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical ...    28   4.0  
U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily ass...    27   7.0  
AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical ...    27   7.0  
AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical ...    27   7.0  
Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical pr...    27   9.3  
U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical pr...    27   9.3  

>AL132876-13|CAD21665.1|  117|Caenorhabditis elegans Hypothetical
           protein Y105E8A.16 protein.
          Length = 117

 Score =  128 bits (309), Expect = 2e-30
 Identities = 55/68 (80%), Positives = 66/68 (97%)
 Frame = +1

Query: 244 KGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 423
           KGP RMPTK+LRITTRKTPCGEGSKTWDRFQMRIHKR+I+LH+P+E+++QITSI+IEPGV
Sbjct: 50  KGPIRMPTKVLRITTRKTPCGEGSKTWDRFQMRIHKRLINLHAPAEVLRQITSISIEPGV 109

Query: 424 EVEVTIAD 447
           ++EVT AD
Sbjct: 110 DIEVTRAD 117



 Score = 57.6 bits (133), Expect = 4e-09
 Identities = 26/36 (72%), Positives = 31/36 (86%)
 Frame = +2

Query: 146 HRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
           HRIR+TLTS+NV+ LEKVCA LI+GAK + L VKGP
Sbjct: 17  HRIRLTLTSQNVKPLEKVCAQLIDGAKNEHLIVKGP 52


>AL132898-5|CAC14408.1|  316|Caenorhabditis elegans Hypothetical
           protein Y59A8B.7 protein.
          Length = 316

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
 Frame = +1

Query: 151 HQDHSYFSQCALTREGLC*PNQWSQETEAACKGPSRMPTKIL---RITTRKTP 300
           +  H Y    A   EGL  P +      A+ K PSRMP + +    +TT +TP
Sbjct: 122 YDGHEYDPMQARNGEGL--PTEGGPAAGASAKTPSRMPARSVPQKPVTTMRTP 172


>AF003136-7|ABE73336.1| 1539|Caenorhabditis elegans Hypothetical
            protein F28B3.1 protein.
          Length = 1539

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +2

Query: 119  KPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKK 229
            + +A+ SP HRI   +TS+N       C+ L+  A++
Sbjct: 943  RSRAQSSPDHRILTLVTSKNAEQDTATCSTLLKRAER 979


>U40798-6|AAA81476.1| 1003|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 158 protein.
          Length = 1003

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -3

Query: 186 ERTL-REVRVILMR*IGETSAWGFSMSLPDTTA 91
           ERTL  E R ++MR + + S  G S+SLP   A
Sbjct: 838 ERTLLMEERTMMMRDLQKVSGGGMSLSLPPANA 870


>AF038609-2|AAK29794.1|  226|Caenorhabditis elegans Hypothetical
           protein C54E4.2a protein.
          Length = 226

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 83  MAAAVVSGKDIEKPQAEVSPIH 148
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>AF038609-1|AAO61425.1|  234|Caenorhabditis elegans Hypothetical
           protein C54E4.2b protein.
          Length = 234

 Score = 27.1 bits (57), Expect = 7.0
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 83  MAAAVVSGKDIEKPQAEVSPIH 148
           ++AA +S +D+EKP +   P+H
Sbjct: 14  ISAAYISSEDLEKPSSADKPVH 35


>Z82272-6|CAB05222.1| 1431|Caenorhabditis elegans Hypothetical protein
            F55G11.9 protein.
          Length = 1431

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 473  YFIGGSAYASAMVTSTSTPGSMLIEVICFT 384
            YF+    Y +A + +T T GS+L+ V C T
Sbjct: 961  YFVS-LVYLTASLINTPTKGSLLLYVFCLT 989


>U97001-4|AAM45354.1|   86|Caenorhabditis elegans Hypothetical
           protein K08B12.2b protein.
          Length = 86

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 382 FQRESVGRSLSCGFASENDPRSLNLHHKEFYG 287
           FQRE +   L+CG AS +  R+L     E +G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


>U97001-3|AAB52258.2|  449|Caenorhabditis elegans Hypothetical
           protein K08B12.2a protein.
          Length = 449

 Score = 26.6 bits (56), Expect = 9.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -2

Query: 382 FQRESVGRSLSCGFASENDPRSLNLHHKEFYG 287
           FQRE +   L+CG AS +  R+L     E +G
Sbjct: 37  FQREQLNGGLTCGGASRSSNRTLFCRKCEGHG 68


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,994,615
Number of Sequences: 27780
Number of extensions: 227418
Number of successful extensions: 489
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 882200194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)