Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30564
(479 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C) ribo... 121 2e-28
At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S ... 121 2e-28
At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S ... 121 2e-28
At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S ... 121 2e-28
At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,... 37 0.006
At1g20530.1 68414.m02558 hypothetical protein 29 2.1
At5g40820.1 68418.m04956 FAT domain-containing protein / phospha... 27 5.0
At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2... 27 8.7
At5g27220.1 68418.m03247 protein transport protein-related low s... 27 8.7
At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containi... 27 8.7
At2g41380.1 68415.m05107 embryo-abundant protein-related similar... 27 8.7
>At5g62300.1 68418.m07821 40S ribosomal protein S20 (RPS20C)
ribosomal protein S20, Arabidopsis thaliana, PIR:T12992
Length = 124
Score = 121 bits (292), Expect = 2e-28
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = +1
Query: 244 KGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 423
KGP RMPTK+L+ITTRK PCGEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGV
Sbjct: 56 KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 115
Query: 424 EVEVTIADA 450
EVEVTIAD+
Sbjct: 116 EVEVTIADS 124
Score = 62.1 bits (144), Expect = 2e-10
Identities = 26/37 (70%), Positives = 34/37 (91%)
Frame = +2
Query: 143 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGP
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGP 58
>At3g47370.2 68416.m05151 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 121 bits (292), Expect = 2e-28
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = +1
Query: 244 KGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 423
KGP RMPTK+L+ITTRK PCGEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGV
Sbjct: 54 KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 113
Query: 424 EVEVTIADA 450
EVEVTIAD+
Sbjct: 114 EVEVTIADS 122
Score = 64.1 bits (149), Expect = 5e-11
Identities = 27/43 (62%), Positives = 37/43 (86%)
Frame = +2
Query: 125 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGP
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGP 56
>At3g47370.1 68416.m05150 40S ribosomal protein S20 (RPS20B) 40S
RIBOSOMAL PROTEIN S20 - ARABIDOPSIS
THALIANA,PID:g1350956
Length = 122
Score = 121 bits (292), Expect = 2e-28
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = +1
Query: 244 KGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 423
KGP RMPTK+L+ITTRK PCGEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGV
Sbjct: 54 KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 113
Query: 424 EVEVTIADA 450
EVEVTIAD+
Sbjct: 114 EVEVTIADS 122
Score = 64.1 bits (149), Expect = 5e-11
Identities = 27/43 (62%), Positives = 37/43 (86%)
Frame = +2
Query: 125 QAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
+A + IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGP
Sbjct: 14 EAPLEQIHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGP 56
>At3g45030.1 68416.m04851 40S ribosomal protein S20 (RPS20A) 40S
ribsomomal proteinS20, Arabidopsis thaliana, pir:T12992
Length = 124
Score = 121 bits (292), Expect = 2e-28
Identities = 53/69 (76%), Positives = 62/69 (89%)
Frame = +1
Query: 244 KGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVIDLHSPSEIVKQITSINIEPGV 423
KGP RMPTK+L+ITTRK PCGEG+ TWDRF++R+HKRVIDL S ++VKQITSI IEPGV
Sbjct: 56 KGPVRMPTKVLKITTRKAPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGV 115
Query: 424 EVEVTIADA 450
EVEVTIAD+
Sbjct: 116 EVEVTIADS 124
Score = 62.1 bits (144), Expect = 2e-10
Identities = 26/37 (70%), Positives = 34/37 (91%)
Frame = +2
Query: 143 IHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
IH+IRITL+S+NV++LEKVC DL+ GAK ++LRVKGP
Sbjct: 22 IHKIRITLSSKNVKNLEKVCTDLVRGAKDKRLRVKGP 58
>At3g13120.1 68416.m01642 30S ribosomal protein S10, chloroplast,
putative similar to 30S ribosomal protein S10 GB:P02364
[Escherichia coli] (est matches suggest the N-terminal
extension)
Length = 191
Score = 37.1 bits (82), Expect = 0.006
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 1/75 (1%)
Frame = +1
Query: 220 SQETEAACKGPSRMPTKILRITTRKTPCGEGSKTWDRFQMRIHKRVID-LHSPSEIVKQI 396
++ T A GP +PTK K+P + F++R H+R+ID L+ ++ + +
Sbjct: 118 ARNTNAKTMGPVPLPTKKRIYCVLKSPHVHKDARF-HFEIRTHQRMIDILYPTAQTIDSL 176
Query: 397 TSINIEPGVEVEVTI 441
+++ GV+VEV +
Sbjct: 177 MQLDLPAGVDVEVKL 191
Score = 30.3 bits (65), Expect = 0.70
Identities = 16/56 (28%), Positives = 27/56 (48%)
Frame = +2
Query: 86 AAAVVSGKDIEKPQAEVSPIHRIRITLTSRNVRSLEKVCADLINGAKKQKLRVKGP 253
A+ V S I +++P +IRI L S V +E C +++ A+ + GP
Sbjct: 73 ASEVPSSSSISVDADKMAPKQKIRIKLRSYWVPLIEDSCKQILDAARNTNAKTMGP 128
>At1g20530.1 68414.m02558 hypothetical protein
Length = 614
Score = 28.7 bits (61), Expect = 2.1
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -2
Query: 364 GRSLSCGFASENDPRSLNLHHKEFY 290
G +C S + P SLNL+H FY
Sbjct: 106 GEGTNCDLLSGSKPESLNLNHDSFY 130
>At5g40820.1 68418.m04956 FAT domain-containing protein /
phosphatidylinositol 3- and 4-kinase family protein
similar to Atr protein [Xenopus laevis] GI:11385422;
contains Pfam profiles PF00454 Phosphatidylinositol 3-
and 4-kinase, PF02259 FAT domain, PF02260 FAT C domain
Length = 2702
Score = 27.5 bits (58), Expect = 5.0
Identities = 11/32 (34%), Positives = 19/32 (59%)
Frame = +2
Query: 170 SRNVRSLEKVCADLINGAKKQKLRVKGPAACQ 265
+R + SL+ D++NG K + L V+ AC+
Sbjct: 1247 ARGLMSLKDQLRDIVNGMKHENLNVRYMVACE 1278
>At5g47370.1 68418.m05838 homeobox-leucine zipper protein 2 (HAT2) /
HD-ZIP protein 2 identical to homeobox-leucine zipper
protein HAT2 (HD-ZIP protein 2) [Arabidopsis thaliana]
SP:P46601; contains Pfam profiles PF04618: HD-ZIP
protein N terminus, PF02183: Homeobox associated leucine
zipper, PF00046: Homeobox domain
Length = 283
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -2
Query: 376 RESVGRSLSCGFASENDPRSLNLH 305
+E +G SLS GF+ ++P +NL+
Sbjct: 5 KEDLGLSLSLGFSQNHNPLQMNLN 28
>At5g27220.1 68418.m03247 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1181
Score = 26.6 bits (56), Expect = 8.7
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -2
Query: 178 IARSKSDPDAVNRGDLCL 125
+A +K DPD+V RG +CL
Sbjct: 698 MAVTKLDPDSVRRGSICL 715
>At3g13150.1 68416.m01645 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 551
Score = 26.6 bits (56), Expect = 8.7
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +3
Query: 57 ISAGIQQATWQPL*CQAKTLRNPRQRSPLFTASGSLLLLAMCAHSRRS 200
+SAG ++ T P+ AKT P SP S LL L++ A S S
Sbjct: 406 LSAGKKKTTSSPVSSSAKTTSTPVSSSP--DTSSFLLSLSLAADSSSS 451
>At2g41380.1 68415.m05107 embryo-abundant protein-related similar to
embryo-abundant protein [Picea glauca] GI:1350531
Length = 269
Score = 26.6 bits (56), Expect = 8.7
Identities = 26/79 (32%), Positives = 32/79 (40%), Gaps = 7/79 (8%)
Frame = +1
Query: 223 QETEAACKGPSRMPTKILRITTRKTPC-------GEGSKTWDRFQMRIHKRVIDLHSPSE 381
Q + A PS PTK+ KTPC G GS R I+K VI + S
Sbjct: 8 QAEQYAAARPS-YPTKLFEYIASKTPCHDLAWDVGAGSGQASRSLAGIYKNVIATDTSS- 65
Query: 382 IVKQITSINIEPGVEVEVT 438
KQ+ P V E+T
Sbjct: 66 --KQLEFAAKLPNVRYEIT 82
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,440,242
Number of Sequences: 28952
Number of extensions: 213855
Number of successful extensions: 479
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 465
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 479
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 819227264
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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