Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30563
         (495 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)       75   3e-14
At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)       75   3e-14
At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)       75   3e-14
At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)...    72   2e-13
At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)...    72   2e-13
At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)       71   3e-13
At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)...    65   3e-11
At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)...    64   5e-11
At3g63200.1 68416.m07100 patatin-related low similarity to patat...    29   1.7  
At4g31210.1 68417.m04432 DNA topoisomerase family protein simila...    27   9.2  

>At2g27710.3 68415.m03359 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 34/63 (53%), Positives = 49/63 (77%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 245 KLS 253
           KL+
Sbjct: 61  KLA 63


>At2g27710.2 68415.m03358 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 34/63 (53%), Positives = 49/63 (77%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 245 KLS 253
           KL+
Sbjct: 61  KLA 63


>At2g27710.1 68415.m03357 60S acidic ribosomal protein P2 (RPP2B)
          Length = 115

 Score = 74.9 bits (176), Expect = 3e-14
 Identities = 34/63 (53%), Positives = 49/63 (77%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+ VAAYLLAVL GK +P +AD++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAYLLAVLSGKASPTSADIKTILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 245 KLS 253
           KL+
Sbjct: 61  KLA 63


>At3g44590.2 68416.m04793 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 30/63 (47%), Positives = 49/63 (77%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+  AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 245 KLS 253
           KL+
Sbjct: 61  KLA 63


>At3g44590.1 68416.m04792 60S acidic ribosomal protein P2 (RPP2D)
           acidic ribosomal protein P2, maize,  PIR:S54179
          Length = 111

 Score = 71.7 bits (168), Expect = 2e-13
 Identities = 30/63 (47%), Positives = 49/63 (77%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+  AA+LLAVLGG   P+A +++ I+ +VG + DGE ++ ++ E++GKD+ +LIA+GRE
Sbjct: 1   MKVAAAFLLAVLGGNANPSADNIKDIIGAVGADVDGESIELLLKEVSGKDIAELIASGRE 60

Query: 245 KLS 253
           KL+
Sbjct: 61  KLA 63


>At2g27720.1 68415.m03360 60S acidic ribosomal protein P2 (RPP2A)
          Length = 115

 Score = 71.3 bits (167), Expect = 3e-13
 Identities = 32/63 (50%), Positives = 47/63 (74%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+ VAA+LLAVL GK +P   D++ IL SVG E +  +++ ++ E+ GKD+ +LIAAGRE
Sbjct: 1   MKVVAAFLLAVLSGKASPTTGDIKDILGSVGAETEDSQIELLLKEVKGKDLAELIAAGRE 60

Query: 245 KLS 253
           KL+
Sbjct: 61  KLA 63


>At5g40040.1 68418.m04856 60S acidic ribosomal protein P2 (RPP2E)
           acidic ribosomal protein P2, Parthenium
           argentatum,SWISSPROT:RLA2_PARAR
          Length = 114

 Score = 64.9 bits (151), Expect = 3e-11
 Identities = 31/63 (49%), Positives = 43/63 (68%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+ VAAYLLA L G   P+ AD++KI+ SVG E D EK+    + +  +DV +LIA GRE
Sbjct: 1   MKVVAAYLLAKLSGNENPSVADLKKIVESVGAEIDQEKIDLFFSLIKDRDVTELIAVGRE 60

Query: 245 KLS 253
           K++
Sbjct: 61  KMA 63


>At3g28500.1 68416.m03560 60S acidic ribosomal protein P2 (RPP2C)
           similar to acidic ribosomal protein P2b (rpp2b)
           GB:U62753 GI:2431770 from [Zea mays]
          Length = 115

 Score = 64.1 bits (149), Expect = 5e-11
 Identities = 31/63 (49%), Positives = 43/63 (68%)
 Frame = +2

Query: 65  MRYVAAYLLAVLGGKTTPAAADVEKILSSVGIEADGEKLKKVITELNGKDVEQLIAAGRE 244
           M+ +AA+LLA LGG   P + D++KIL SVG E D  K+  + + +   DV +LIAAGRE
Sbjct: 1   MKVIAAFLLAKLGGNENPTSNDLKKILESVGAEIDETKIDLLFSLIKDHDVTELIAAGRE 60

Query: 245 KLS 253
           K+S
Sbjct: 61  KMS 63


>At3g63200.1 68416.m07100 patatin-related low similarity to
           patatin-like latex protein allergen Hev b 7 - Hevea
           brasiliensis, EMBL:AF113546; contains patatin domain
           PF01734
          Length = 384

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 14/43 (32%), Positives = 27/43 (62%), Gaps = 4/43 (9%)
 Frame = +2

Query: 134 EKILSSVGIEADGEKLKKVITELNGKDVE----QLIAAGREKL 250
           E++L   G+E     +K+++TE NG+ +E    +L+A+G+  L
Sbjct: 325 EELLKERGVETAPFGVKRILTESNGERIEGFVQRLVASGKSSL 367


>At4g31210.1 68417.m04432 DNA topoisomerase family protein similar to
            DNA Topoisomerase I (SP:Q9X3X7) {Zymomonas mobilis}
          Length = 1280

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
 Frame = -3

Query: 199  LSDYFLKLLTVSFDTDGAEDLLNVSG---SWRGL 107
            L+ YF ++   SF  D   +L NVSG    W+GL
Sbjct: 1006 LTHYFTEITDYSFTADMETELDNVSGGVTEWKGL 1039


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,177,041
Number of Sequences: 28952
Number of extensions: 124121
Number of successful extensions: 346
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 339
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 346
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 868578304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)