Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30561
(782 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein pro... 45 9e-07
AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein ... 44 1e-06
L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein pro... 42 5e-06
AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc fi... 38 1e-04
L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein pro... 29 0.049
AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc fi... 28 0.11
AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc fi... 26 0.45
DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 vari... 24 1.8
DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 vari... 24 1.8
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr... 22 7.4
AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein. 21 9.8
>L01589-1|AAA27736.1| 81|Apis mellifera zinc finger protein
protein.
Length = 81
Score = 44.8 bits (101), Expect = 9e-07
Identities = 19/52 (36%), Positives = 28/52 (53%)
Frame = +2
Query: 347 KDQLDCPICKKNFLNYVSLNTHMNEHYPDFICENCGKAFASKARLRGHMRTH 502
K C C+K +++ +L H+ H C CGKAF+ L+GH+RTH
Sbjct: 14 KKSFSCKYCEKVYVSLGALKMHIRTHTLPCKCHLCGKAFSRPWLLQGHIRTH 65
Score = 27.9 bits (59), Expect = 0.11
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Frame = +2
Query: 362 CPICKKNFLNYVSLNTHMNEHYPD--FICENCGKAFA 466
C +C K F L H+ H + F C++C +AFA
Sbjct: 45 CHLCGKAFSRPWLLQGHIRTHTGEKPFSCQHCNRAFA 81
Score = 26.2 bits (55), Expect = 0.34
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 66 KTNRSFSCAVCPEKSSSLDEIKEHVTQH 149
+ +SFSC C + SL +K H+ H
Sbjct: 12 QAKKSFSCKYCEKVYVSLGALKMHIRTH 39
Score = 21.4 bits (43), Expect = 9.8
Identities = 6/22 (27%), Positives = 12/22 (54%)
Frame = +1
Query: 508 RTFPCKYCSATFDRITKRENHV 573
++F CKYC + + + H+
Sbjct: 15 KSFSCKYCEKVYVSLGALKMHI 36
>AY338499-1|AAR08420.1| 500|Apis mellifera Kruppel-like protein 1
protein.
Length = 500
Score = 44.4 bits (100), Expect = 1e-06
Identities = 18/49 (36%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 362 CPICKKNFLNYVSLNTHMNEHYPD--FICENCGKAFASKARLRGHMRTH 502
C +C K F+ L HM H + ++C+ CGK F +L+ H RTH
Sbjct: 178 CTVCSKTFIQSGQLVIHMRTHTGEKPYVCKACGKGFTCSKQLKVHTRTH 226
Score = 40.3 bits (90), Expect = 2e-05
Identities = 22/58 (37%), Positives = 28/58 (48%), Gaps = 4/58 (6%)
Frame = +2
Query: 341 LEKDQLDCPICKKNF----LNYVSLNTHMNEHYPDFICENCGKAFASKARLRGHMRTH 502
+E+ C +C+K F L L +H E + C CGK FA ARL H RTH
Sbjct: 57 IEEKTYQCLLCQKAFDQKNLYQSHLRSHGKEGEDPYRCNICGKTFAVPARLTRHYRTH 114
Score = 38.3 bits (85), Expect = 8e-05
Identities = 22/88 (25%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Frame = +2
Query: 362 CPICKKNFLNYVSLNTHMNEHYPD--FICENCGKAFASKARLRGHMRTHEVARSPASTAA 535
C C K+F +L+ H H + + C+ C +AF +L HMR H R T
Sbjct: 122 CEYCSKSFSVKENLSVHRRIHTKERPYKCDVCERAFEHSGKLHRHMRIHTGERPHKCTVC 181
Query: 536 RLLIGSRNARITYPRSIRPASATACKRC 619
+ + R+ CK C
Sbjct: 182 SKTFIQSGQLVIHMRTHTGEKPYVCKAC 209
Score = 30.7 bits (66), Expect = 0.016
Identities = 18/67 (26%), Positives = 25/67 (37%), Gaps = 2/67 (2%)
Frame = +2
Query: 362 CPICKKNFLNYVSLNTHMNEHYPD--FICENCGKAFASKARLRGHMRTHEVARSPASTAA 535
C C K F L H H + + C+ CGK+F L+ H H + T
Sbjct: 206 CKACGKGFTCSKQLKVHTRTHTGEKPYTCDICGKSFGYNHVLKLHQVAHYGEKVYKCTLC 265
Query: 536 RLLIGSR 556
GS+
Sbjct: 266 HETFGSK 272
Score = 21.8 bits (44), Expect = 7.4
Identities = 7/28 (25%), Positives = 14/28 (50%)
Frame = +3
Query: 81 FSCAVCPEKSSSLDEIKEHVTQHDRSNI 164
+ C +C E S ++ H+ H S++
Sbjct: 260 YKCTLCHETFGSKKTMELHIKTHSDSSV 287
>L01588-1|AAA27735.1| 74|Apis mellifera zinc finger protein
protein.
Length = 74
Score = 42.3 bits (95), Expect = 5e-06
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
Frame = +2
Query: 359 DCPICKKNFLNYVSLNTHMNEHYPD--FICENCGKAFASKARLRGHMRTH 502
+CP C K F L THM H + + C +C + F A LR H+R H
Sbjct: 11 ECPECHKRFTRDHHLKTHMRLHTGEKPYHCSHCDRQFVQVANLRRHLRVH 60
Score = 26.2 bits (55), Expect = 0.34
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +2
Query: 407 THMNEHYPDFICENCGKAFASKARLRGHMRTH 502
TH E F C C K F L+ HMR H
Sbjct: 3 THTGEK--PFECPECHKRFTRDHHLKTHMRLH 32
>AB208108-1|BAE72140.1| 92|Apis mellifera Broad complex zinc
finger domain-Z3 isoform protein.
Length = 92
Score = 37.9 bits (84), Expect = 1e-04
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Frame = +2
Query: 359 DCPICKKNFLNYVSLNTHMNEHYPD----FICENCGKAFASKARLRGH 490
+CP C++NF Y SL H + + ++CE C + + +K L H
Sbjct: 7 ECPYCRRNFSCYYSLKRHFQDKHEQSDTLYVCEFCNRRYRTKNSLTTH 54
>L01587-1|AAA27734.1| 69|Apis mellifera zinc finger protein
protein.
Length = 69
Score = 29.1 bits (62), Expect = 0.049
Identities = 11/36 (30%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = +2
Query: 401 LNTHMNEHYPD--FICENCGKAFASKARLRGHMRTH 502
L H+ H+ F CE C + +K+ L H+++H
Sbjct: 4 LEYHLRNHFGSKPFKCEKCSYSCVNKSMLNSHLKSH 39
>AB208107-1|BAE72139.1| 71|Apis mellifera Broad complex zinc
finger domain-Z2 isoform protein.
Length = 71
Score = 27.9 bits (59), Expect = 0.11
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = +2
Query: 434 FICENCGKAFASKARLRGHMRTHEVAR 514
F C+ CGK SKA L+ H+ R
Sbjct: 6 FTCQLCGKVLCSKASLKRHVADKHAER 32
>AB208106-1|BAE72138.1| 111|Apis mellifera Broad complex zinc
finger domain-Z1 isoform protein.
Length = 111
Score = 25.8 bits (54), Expect = 0.45
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +2
Query: 431 DFICENCGKAFASKARLRGHMR 496
+F CE C K S RLR H++
Sbjct: 2 EFRCEPCNKILTSLTRLRRHIQ 23
>DQ384991-1|ABD51779.1| 94|Apis mellifera allergen Api m 6 variant
2 precursor protein.
Length = 94
Score = 23.8 bits (49), Expect = 1.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 529 STCRGTCDLVRPHVAPKP 476
S C G C P+V PKP
Sbjct: 44 SRCDGRCQRFCPNVVPKP 61
>DQ384990-1|ABD51778.1| 92|Apis mellifera allergen Api m 6 variant
1 precursor protein.
Length = 92
Score = 23.8 bits (49), Expect = 1.8
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 529 STCRGTCDLVRPHVAPKP 476
S C G C P+V PKP
Sbjct: 44 SRCDGRCQRFCPNVVPKP 61
>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
protein.
Length = 1308
Score = 21.8 bits (44), Expect = 7.4
Identities = 15/60 (25%), Positives = 22/60 (36%)
Frame = +2
Query: 398 SLNTHMNEHYPDFICENCGKAFASKARLRGHMRTHEVARSPASTAARLLIGSRNARITYP 577
SL +H+P + A RL GH H AS+A+ + + N P
Sbjct: 909 SLLQSNQQHFPHHQIQVSTSAGLQTIRLSGHSVLHSAQSVVASSASNVTNVTTNLTTILP 968
>AB207270-1|BAE72137.1| 429|Apis mellifera broad-complex protein.
Length = 429
Score = 21.4 bits (43), Expect = 9.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +2
Query: 362 CPICKKNFLNYVSLNTHMNEHY 427
C +C K F SLN H + ++
Sbjct: 404 CALCHKVFRTLNSLNNHKSIYH 425
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,720
Number of Sequences: 438
Number of extensions: 4305
Number of successful extensions: 28
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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