Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30560
         (710 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like prote...    24   1.1  
AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    23   1.9  
EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-toler...    23   2.5  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    21   7.5  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    21   7.5  
DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory pro...    21   9.9  

>AY600513-1|AAT11861.1|  314|Tribolium castaneum spalt-like protein
           protein.
          Length = 314

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 686 EPARGPASWANMLPHEG 636
           +PA+ PA ++N+LP  G
Sbjct: 83  DPAKDPAIYSNLLPRPG 99


>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory receptor
           candidate 36 protein.
          Length = 355

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 12/34 (35%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -1

Query: 164 FSLTHKK*SSLQSWTKLMAVS--KVLSRSAHAKA 69
           FSL H+    +Q+WT L+ ++   V+S S   K+
Sbjct: 32  FSLEHQLWQKIQAWTYLILLTTWTVISASTRIKS 65


>EF468474-1|ABR25244.1|  516|Tribolium castaneum methoprene-tolerant
           protein.
          Length = 516

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = -2

Query: 148 KSSPHCSPGRS*WPFPRCYLVQHTLKRTARSIYK 47
           ++SP  SP  S  P+P    +    ++T  SIY+
Sbjct: 474 RTSPQLSPMSSLPPYPNRTQITEVTQQTEPSIYQ 507


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 155 SRRNSFVLWKMLERRGASILSMVSLSRVNPG 247
           ++ +SFV+W ++E      L  VS+  ++ G
Sbjct: 226 AQASSFVVWPLVENNPTLYLIPVSVILISVG 256


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 9/31 (29%), Positives = 18/31 (58%)
 Frame = +2

Query: 155 SRRNSFVLWKMLERRGASILSMVSLSRVNPG 247
           ++ +SFV+W ++E      L  VS+  ++ G
Sbjct: 226 AQASSFVVWPLVENNPTLYLIPVSVILISVG 256


>DQ855492-1|ABH88179.1|  251|Tribolium castaneum chemosensory
           protein 6 protein.
          Length = 251

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 10/43 (23%), Positives = 20/43 (46%)
 Frame = -2

Query: 706 SEPVIQENPPVAPRHGRTCSHMRVMALVMQGVGYNLVRCLGMI 578
           ++PV+   PP AP      ++++        +   +VR LG +
Sbjct: 187 NKPVVVTKPPQAPPFATVGANLQATVSFGTNLVGGIVRSLGTL 229


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,848
Number of Sequences: 336
Number of extensions: 2874
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)