Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30560
         (710 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyce...    27   2.0  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    27   2.0  
SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase |Schizosac...    26   4.6  
SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1 |Schizosa...    26   6.1  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    26   6.1  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   8.1  
SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces pomb...    25   8.1  

>SPAC6F12.08c |||exocyst complex subunit Exo84|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 578

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 4/44 (9%)
 Frame = +1

Query: 121 VQDCNEDYFLCVKEKLLRI----VENARTSRSVNLVDGVFIKGE 240
           +QD +ED F+ +  KLLRI     +N   +   NL + VFI GE
Sbjct: 79  LQDLSEDEFVSLYNKLLRIHMGVRKNLEKNFYKNLNEYVFISGE 122


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 338 FEEVDHSVQESVVDLCVSGLRVGGERLRD 252
           FE +DH   E + DL +S L +  E +RD
Sbjct: 172 FERMDHLRDEKIFDLRLSYLEIYNETIRD 200


>SPAC14C4.15c ||SPAPJ760.01c|dipeptidyl aminopeptidase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 853

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = -1

Query: 152 HKK*SSLQSWTKLMAVSKVLSRSAHAKANS 63
           H K S+ Q W K  AVS  L  S++ ++NS
Sbjct: 12  HGKSSTRQHWRKRSAVSSSLEFSSYEESNS 41


>SPAC22F3.10c |gcs1|apd1|glutamate-cysteine ligase Gcs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 669

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +3

Query: 207 QSCRWCLYQG*TREAITEPLPADPEARDAEVNYRLLDGVVNLFETHSIEVKMN 365
           Q CRW +  G   +   E +   P++R   V+  + +   NL E + + V +N
Sbjct: 356 QDCRWNVIAGAVDDRTEEEMKTVPKSRYDSVDLYISNDKRNLPEYNDVPVVIN 408


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 252 ITEPLPADPEARDAEVNYRLLDGVVNLFETHSIEVKM 362
           + +PLP   E++ A V+Y  L   +  FE HS  V M
Sbjct: 8   LAKPLPKLDESKQAWVSYLWLKKALPGFEEHSAYVYM 44


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +3

Query: 333 FETHSIEVKMNPAEKEELQRSLEE 404
           + + +IE+K+   EKEE  R+LEE
Sbjct: 97  YASKNIELKLQKKEKEEELRNLEE 120


>SPAC29E6.09 ||SPAC30.13|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 339

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
 Frame = -1

Query: 692 PREP-ARGPASWANMLPHEGD-GSRDARRGV 606
           P EP A GP +W     HEGD  + D   G+
Sbjct: 232 PPEPSAEGPFTWNGASSHEGDINNNDTELGL 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,584,093
Number of Sequences: 5004
Number of extensions: 48064
Number of successful extensions: 114
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)