Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30560
         (710 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0472 - 3346195-3346310,3346587-3346878                           30   2.1  
04_04_1457 - 33741048-33741146,33741647-33741760,33741938-337420...    29   3.6  
02_03_0338 + 17905341-17906002,17906214-17906499,17907975-17908640     28   8.4  

>06_01_0472 - 3346195-3346310,3346587-3346878
          Length = 135

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 689 REPARGPASWANMLPHEGDGSRDARRGVQPRTLSWYD 579
           R P R  A+WAN L   G+  R+  RG    T  W+D
Sbjct: 13  RHPDRLLAAWANDLQRPGETRRNTERGAMSLT-RWHD 48


>04_04_1457 - 33741048-33741146,33741647-33741760,33741938-33742052,
            33742154-33742560,33743342-33743476,33743576-33743970,
            33744225-33744916,33745014-33745097,33745195-33745286,
            33745374-33745457,33745535-33745714,33746258-33746302,
            33746399-33746692,33747199-33747585,33747713-33747899,
            33748042-33748118,33748936-33749067,33749315-33749416,
            33749744-33749827,33749902-33749992,33750105-33750178,
            33750644-33750664,33751433-33751477,33752427-33752561,
            33752693-33752752
          Length = 1376

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 10/46 (21%), Positives = 23/46 (50%)
 Frame = +1

Query: 88   RDSTLETAISFVQDCNEDYFLCVKEKLLRIVENARTSRSVNLVDGV 225
            +   ++  + F QDC E YF+ + +  L+I+  +    +    +G+
Sbjct: 1237 KKDAIQKLVKFFQDCPEQYFVHILDAFLKIITKSSRINTAMATNGL 1282


>02_03_0338 + 17905341-17906002,17906214-17906499,17907975-17908640
          Length = 537

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/44 (34%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
 Frame = +2

Query: 482 VHRQTPSPQALATAKIALVLAVILFVAWCL-KQDHTKTTYEVVP 610
           V    PSP + +++ + LVLA +LFVA  L ++   +  Y + P
Sbjct: 3   VQELVPSPWSSSSSFLVLVLATLLFVAAFLRRRQGARRKYNIPP 46


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,726,817
Number of Sequences: 37544
Number of extensions: 355401
Number of successful extensions: 860
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 833
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 860
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)