Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30560
         (710 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)                     30   1.6  
SB_15003| Best HMM Match : WAP (HMM E-Value=0.0036)                    30   2.1  
SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.9  
SB_32858| Best HMM Match : DUF59 (HMM E-Value=6.4)                     28   6.5  
SB_48444| Best HMM Match : Death (HMM E-Value=2.1e-16)                 28   6.5  
SB_10359| Best HMM Match : CoA_transf_3 (HMM E-Value=0)                28   6.5  
SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)                    28   8.6  
SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)                   28   8.6  

>SB_55554| Best HMM Match : AAA (HMM E-Value=0.022)
          Length = 1681

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/34 (41%), Positives = 21/34 (61%)
 Frame = +1

Query: 370 LRRKNFRGHLKKVVVRRREAALWASSDS*QPRYY 471
           +R  N  GH+K+ VVRRR  +L   SD  + +Y+
Sbjct: 62  VRLTNPTGHIKETVVRRRRFSLTEESDIPESKYH 95


>SB_15003| Best HMM Match : WAP (HMM E-Value=0.0036)
          Length = 230

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = +2

Query: 461 QDTIRKAVHRQTPSPQALATAKIALVLAVILFVA-WCLKQDHT 586
           Q T+R+ + RQ     ALA A +   + ++LF+A W L Q  T
Sbjct: 68  QKTVRRRLDRQGALDSALAMASLPRSVMLVLFLALWTLAQGQT 110


>SB_53791| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 94  STLETAISFVQDCNEDYFLCVKEKLLRIVENARTSR 201
           ST      FV   ++DYFLC+   L  + + A+T R
Sbjct: 807 STRNYEFDFVLRIDDDYFLCLGRLLAELPQRAKTPR 842


>SB_47635| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 158

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 449 TPSSQDTIRKAVHRQTPSPQALATAKIALV 538
           TPSS+ T+ K + +  P P + +T  I+L+
Sbjct: 5   TPSSKLTLTKGIQKLVPGPPSRSTVSISLI 34


>SB_32858| Best HMM Match : DUF59 (HMM E-Value=6.4)
          Length = 235

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 647 PHEGDGSRDARRGVQPRTLSWYDLVSSTRPR 555
           P E D      RGVQPR  SW     ST  R
Sbjct: 56  PQEKDEPDSTGRGVQPRNSSWNSTPPSTSER 86


>SB_48444| Best HMM Match : Death (HMM E-Value=2.1e-16)
          Length = 486

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/31 (45%), Positives = 14/31 (45%)
 Frame = -1

Query: 647 PHEGDGSRDARRGVQPRTLSWYDLVSSTRPR 555
           P E D      RGVQPR  SW     ST  R
Sbjct: 241 PQEKDEPDSTGRGVQPRNSSWNSTPPSTSER 271


>SB_10359| Best HMM Match : CoA_transf_3 (HMM E-Value=0)
          Length = 382

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 16/65 (24%), Positives = 28/65 (43%)
 Frame = +1

Query: 49  YILIALFALACAERDSTLETAISFVQDCNEDYFLCVKEKLLRIVENARTSRSVNLVDGVF 228
           YI +         RDS L   ++ + D      +CV   LL ++E  ++ R   ++D   
Sbjct: 128 YIALTGLLSMLGRRDSNLTPPLNLLGDFAGGGLMCVMGILLALLERGKSGRG-QVIDTAM 186

Query: 229 IKGEP 243
           + G P
Sbjct: 187 VDGAP 191


>SB_47441| Best HMM Match : NOT2_3_5 (HMM E-Value=0)
          Length = 584

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = +1

Query: 532 PSTSRYSLRGLVLETRSYQDNVRGCTPRLASREPSPSCGSMFAHDAGPRAGSL 690
           P+T    + G  +   S Q++V    PR+ +  P+ + GS    ++ PR+GS+
Sbjct: 166 PTTPPPPVSGYAVVAGSQQNHVESTPPRMVNHNPTATTGS----NSFPRSGSI 214


>SB_14805| Best HMM Match : DUF964 (HMM E-Value=0.22)
          Length = 628

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = +3

Query: 261 PLPADPEARDAEVNYRLLDGVVNLFETHSIEVKMNPAEKEELQRSLEE 404
           P+PA      AEVN + LD ++ +FE    +       +  LQ+  E+
Sbjct: 230 PVPAKALVTRAEVNAKDLDSLIEMFEHFKADTASELMRQNYLQQQREQ 277


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,035,358
Number of Sequences: 59808
Number of extensions: 393657
Number of successful extensions: 869
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 868
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)