Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30560
(710 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
X87852-1|CAA61132.1| 1871|Homo sapiens SEX protein protein. 32 2.3
BX936365-2|CAI43194.1| 1871|Homo sapiens plexin A3 protein. 32 2.3
U38996-1|AAB18373.1| 269|Homo sapiens pre TCR alpha protein. 31 5.4
U36759-1|AAB06194.1| 281|Homo sapiens pre-T cell receptor alpha... 31 5.4
BC100774-1|AAI00775.1| 281|Homo sapiens pre T-cell antigen rece... 31 5.4
BC100773-1|AAI00774.1| 281|Homo sapiens pre T-cell antigen rece... 31 5.4
BC100772-1|AAI00773.1| 281|Homo sapiens pre T-cell antigen rece... 31 5.4
BC100771-1|AAI00772.1| 281|Homo sapiens pre T-cell antigen rece... 31 5.4
BC069336-1|AAH69336.1| 281|Homo sapiens pre T-cell antigen rece... 31 5.4
AL035587-2|CAI21484.2| 281|Homo sapiens pre T-cell antigen rece... 31 5.4
AF165312-1|AAF89556.1| 256|Homo sapiens pre-T-cell receptor alp... 31 5.4
AF084941-1|AAC83346.1| 281|Homo sapiens pre-T cell receptor alp... 31 5.4
>X87852-1|CAA61132.1| 1871|Homo sapiens SEX protein protein.
Length = 1871
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 141 LLFMCQGETPSYCGKC*NVEERQSCRWCL 227
LL+ C + PS CG C + R +C WC+
Sbjct: 782 LLYKCWAQRPS-CGLCLKADPRFNCGWCI 809
>BX936365-2|CAI43194.1| 1871|Homo sapiens plexin A3 protein.
Length = 1871
Score = 31.9 bits (69), Expect = 2.3
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +3
Query: 141 LLFMCQGETPSYCGKC*NVEERQSCRWCL 227
LL+ C + PS CG C + R +C WC+
Sbjct: 782 LLYKCWAQRPS-CGLCLKADPRFNCGWCI 809
>U38996-1|AAB18373.1| 269|Homo sapiens pre TCR alpha protein.
Length = 269
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 683 PARGPASWANMLPHEGDGSRDARRGVQPRTLSWYDLVSSTRPRRE*RLVLGRSSLWL 513
P+ ASW ++ H G G+ R QP LS + T P+ R G +LWL
Sbjct: 83 PSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPG-GALWL 138
>U36759-1|AAB06194.1| 281|Homo sapiens pre-T cell receptor
alpha-type chain precursor protein.
Length = 281
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 683 PARGPASWANMLPHEGDGSRDARRGVQPRTLSWYDLVSSTRPRRE*RLVLGRSSLWL 513
P+ ASW ++ H G G+ R QP LS + T P+ R G +LWL
Sbjct: 95 PSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPG-GALWL 150
>BC100774-1|AAI00775.1| 281|Homo sapiens pre T-cell antigen
receptor alpha protein.
Length = 281
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 683 PARGPASWANMLPHEGDGSRDARRGVQPRTLSWYDLVSSTRPRRE*RLVLGRSSLWL 513
P+ ASW ++ H G G+ R QP LS + T P+ R G +LWL
Sbjct: 95 PSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPG-GALWL 150
>BC100773-1|AAI00774.1| 281|Homo sapiens pre T-cell antigen
receptor alpha protein.
Length = 281
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 683 PARGPASWANMLPHEGDGSRDARRGVQPRTLSWYDLVSSTRPRRE*RLVLGRSSLWL 513
P+ ASW ++ H G G+ R QP LS + T P+ R G +LWL
Sbjct: 95 PSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPG-GALWL 150
>BC100772-1|AAI00773.1| 281|Homo sapiens pre T-cell antigen
receptor alpha protein.
Length = 281
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 683 PARGPASWANMLPHEGDGSRDARRGVQPRTLSWYDLVSSTRPRRE*RLVLGRSSLWL 513
P+ ASW ++ H G G+ R QP LS + T P+ R G +LWL
Sbjct: 95 PSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPG-GALWL 150
>BC100771-1|AAI00772.1| 281|Homo sapiens pre T-cell antigen
receptor alpha protein.
Length = 281
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 683 PARGPASWANMLPHEGDGSRDARRGVQPRTLSWYDLVSSTRPRRE*RLVLGRSSLWL 513
P+ ASW ++ H G G+ R QP LS + T P+ R G +LWL
Sbjct: 95 PSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPG-GALWL 150
>BC069336-1|AAH69336.1| 281|Homo sapiens pre T-cell antigen
receptor alpha protein.
Length = 281
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 683 PARGPASWANMLPHEGDGSRDARRGVQPRTLSWYDLVSSTRPRRE*RLVLGRSSLWL 513
P+ ASW ++ H G G+ R QP LS + T P+ R G +LWL
Sbjct: 95 PSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPG-GALWL 150
>AL035587-2|CAI21484.2| 281|Homo sapiens pre T-cell antigen
receptor alpha protein.
Length = 281
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 683 PARGPASWANMLPHEGDGSRDARRGVQPRTLSWYDLVSSTRPRRE*RLVLGRSSLWL 513
P+ ASW ++ H G G+ R QP LS + T P+ R G +LWL
Sbjct: 95 PSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPG-GALWL 150
>AF165312-1|AAF89556.1| 256|Homo sapiens pre-T-cell receptor alpha
chain protein.
Length = 256
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 683 PARGPASWANMLPHEGDGSRDARRGVQPRTLSWYDLVSSTRPRRE*RLVLGRSSLWL 513
P+ ASW ++ H G G+ R QP LS + T P+ R G +LWL
Sbjct: 70 PSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPG-GALWL 125
>AF084941-1|AAC83346.1| 281|Homo sapiens pre-T cell receptor alpha
chain 1 precursor protein.
Length = 281
Score = 30.7 bits (66), Expect = 5.4
Identities = 19/57 (33%), Positives = 26/57 (45%)
Frame = -1
Query: 683 PARGPASWANMLPHEGDGSRDARRGVQPRTLSWYDLVSSTRPRRE*RLVLGRSSLWL 513
P+ ASW ++ H G G+ R QP LS + T P+ R G +LWL
Sbjct: 95 PSEELASWEPLVCHTGPGAEGHSRSTQPMHLSGEASTARTCPQEPLRGTPG-GALWL 150
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 94,537,746
Number of Sequences: 237096
Number of extensions: 1899119
Number of successful extensions: 3827
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 3600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3827
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8287202872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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