Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30560
         (710 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical ...    29   3.3  
Z27078-5|CAE54900.1|   96|Caenorhabditis elegans Hypothetical pr...    28   5.7  

>AF025462-3|AAB71002.1|  309|Caenorhabditis elegans Hypothetical
           protein K10F12.4a protein.
          Length = 309

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
 Frame = +2

Query: 113 LASSRTAMRTTFYVSRRNSF---VLWKMLERRGASILSMVSLSRVNPGSHH 256
           L +S   +R TFY  R+  +   ++W  LER     +S  S  R  PG H+
Sbjct: 225 LRNSENLLRDTFYGGRQPGYADYLMWPFLERLQLLTMSPNSQFRYFPGLHY 275


>Z27078-5|CAE54900.1|   96|Caenorhabditis elegans Hypothetical
           protein K04H4.7 protein.
          Length = 96

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 19/60 (31%), Positives = 28/60 (46%)
 Frame = +1

Query: 37  NMKFYILIALFALACAERDSTLETAISFVQDCNEDYFLCVKEKLLRIVENARTSRSVNLV 216
           N   Y+L+A   L CA  ++  E +I    DC ED    V   L+   E   ++R  NL+
Sbjct: 4   NSMIYLLVAFLVLLCATTEAKKECSI----DCQEDGSAAVDLGLVLPPELYESTRLSNLL 59


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,385,205
Number of Sequences: 27780
Number of extensions: 277515
Number of successful extensions: 739
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 697
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 739
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)