Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30560
         (710 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g70180.2 68414.m08076 sterile alpha motif (SAM) domain-contai...    29   2.3  
At1g70180.1 68414.m08075 sterile alpha motif (SAM) domain-contai...    29   2.3  
At4g04630.1 68417.m00677 expressed protein contains Pfam profile...    29   3.0  
At2g16270.1 68415.m01863 expressed protein  and genefinder; expr...    28   7.0  
At1g07010.1 68414.m00746 calcineurin-like phosphoesterase family...    28   7.0  

>At1g70180.2 68414.m08076 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 460

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 98  PWKRPLASSRTAMRTTFYVSRRNSFVLWKMLERRGASILSMVSLSR 235
           P  RPL+SSRTA  ++  +S  +S   W + + R  S    V  SR
Sbjct: 130 PRDRPLSSSRTARGSSQMISSSSSHPAWALEDLRRRSPERFVDTSR 175


>At1g70180.1 68414.m08075 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 456

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 17/46 (36%), Positives = 24/46 (52%)
 Frame = +2

Query: 98  PWKRPLASSRTAMRTTFYVSRRNSFVLWKMLERRGASILSMVSLSR 235
           P  RPL+SSRTA  ++  +S  +S   W + + R  S    V  SR
Sbjct: 130 PRDRPLSSSRTARGSSQMISSSSSHPAWALEDLRRRSPERFVDTSR 175


>At4g04630.1 68417.m00677 expressed protein contains Pfam profile
           PF04520: Protein of unknown function, DUF584
          Length = 168

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 23/73 (31%), Positives = 37/73 (50%), Gaps = 6/73 (8%)
 Frame = -1

Query: 260 LRDGFPGSPLIKTPSTRLTLLDVLAFS--TIRRSFSLTHKK*SS----LQSWTKLMAVSK 99
           LR+G   SP +K P +  +     + S   IRRS  ++  K SS    +  W+K+   SK
Sbjct: 36  LREGETSSPEMKIPKSHFSSSSSSSSSPWNIRRSKEVSGVKQSSAPMNVPDWSKVYGDSK 95

Query: 98  VLSRSAHAKANSA 60
              RS+H  +++A
Sbjct: 96  SNRRSSHLHSHAA 108


>At2g16270.1 68415.m01863 expressed protein  and genefinder;
           expression supported by MPSS
          Length = 759

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 21/57 (36%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
 Frame = +3

Query: 246 EAITEPLPA-DPEARDAEVNYRLL--DGV-VNLFETHSIEVKMNPAEKEELQRSLEE 404
           + + E  P+ D E+ D E N + L  DG+ +N+ E    E +M+P EK E ++ LEE
Sbjct: 451 DELAEVKPSTDIESNDGERNLKALFEDGLELNIEELR--ESEMSPEEKLETEKKLEE 505


>At1g07010.1 68414.m00746 calcineurin-like phosphoesterase family
           protein contains Pfam profile: PF00149 calcineurin-like
           phosphoesterase
          Length = 389

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/59 (25%), Positives = 25/59 (42%)
 Frame = +2

Query: 77  RVLNEIAPWKRPLASSRTAMRTTFYVSRRNSFVLWKMLERRGASILSMVSLSRVNPGSH 253
           R+  E++ W R   +   + +  F  +R    V+W  L  R  S L    + +VN   H
Sbjct: 256 RINREVSTWMRSPTNYEDSPQMPFIATRGYDSVVWSRLYSRETSELEDYQIEQVNKILH 314


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,824,913
Number of Sequences: 28952
Number of extensions: 266316
Number of successful extensions: 637
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)