Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30559
(704 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 149 4e-37
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 149 4e-37
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M... 33 0.053
SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr 1|||Ma... 29 0.65
SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit L1... 28 1.1
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 28 1.1
SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.6
SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces ... 27 2.6
SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces p... 26 4.6
SPBC1348.02 |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.0
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1... 26 6.0
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 6.0
SPBPB2B2.19c |||S. pombe specific 5Tm protein family|Schizosacch... 26 6.0
SPAC977.01 |||S. pombe specific 5Tm protein family|Schizosacchar... 26 6.0
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha... 26 6.0
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 6.0
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 25 8.0
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 25 8.0
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p... 25 8.0
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 25 8.0
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 149 bits (361), Expect = 4e-37
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 192
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 193 SSEALEAGRICCNKYLVKNCGRIS 264
+SEALEA RIC NKYLVK G+ S
Sbjct: 61 TSEALEAARICANKYLVKIGGKDS 84
Score = 135 bits (326), Expect = 7e-33
Identities = 61/84 (72%), Positives = 71/84 (84%)
Frame = +3
Query: 255 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 434
KD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 82 KDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSVRTK 141
Query: 435 DRWKAQVIEALRRAKFKFPGRQKI 506
D +A IEALRR ++KFPG+Q+I
Sbjct: 142 DSSRATAIEALRRCQYKFPGQQRI 165
Score = 38.7 bits (86), Expect = 8e-04
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 473 CQVQVPRTSKDLVSKKWGFTKYERDEF 553
CQ + P + +VSKKWGF++Y RDE+
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEY 181
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 149 bits (361), Expect = 4e-37
Identities = 66/84 (78%), Positives = 74/84 (88%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 192
M RRPARCYRYCKNKPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 193 SSEALEAGRICCNKYLVKNCGRIS 264
+SEALEA RIC NKYLVK G+ S
Sbjct: 61 TSEALEAARICANKYLVKIGGKDS 84
Score = 134 bits (325), Expect = 9e-33
Identities = 61/84 (72%), Positives = 71/84 (84%)
Frame = +3
Query: 255 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSS 434
KD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSVR+
Sbjct: 82 KDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSVRTK 141
Query: 435 DRWKAQVIEALRRAKFKFPGRQKI 506
D +A IEALRR ++KFPG+Q+I
Sbjct: 142 DSSRATAIEALRRCQYKFPGQQRI 165
Score = 38.7 bits (86), Expect = 8e-04
Identities = 14/27 (51%), Positives = 20/27 (74%)
Frame = +2
Query: 473 CQVQVPRTSKDLVSKKWGFTKYERDEF 553
CQ + P + +VSKKWGF++Y RDE+
Sbjct: 155 CQYKFPGQQRIIVSKKWGFSQYARDEY 181
>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 629
Score = 32.7 bits (71), Expect = 0.053
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = +3
Query: 516 RSGVSQSMNVMSLRSCVKR--AAFANDGLHRAVPPGTWTSRTLWKEGFRA 659
RSG+ QS N + L+ + A+ A G H + PG WT L + G+ A
Sbjct: 304 RSGMLQSWNKLCLKGGIIEVSASLAGSGEHAGLWPGIWTLGNLARPGYMA 353
>SPAC11D3.10 |||nifs homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 434
Score = 29.1 bits (62), Expect = 0.65
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +3
Query: 456 IEALRRAKFKFPGRQKI*YQRSGVSQSMNVMSLRSCVKRAAFANDGLHRAVPPGTWTSRT 635
I+A R G K Y MN++ + + N+GL+ P W RT
Sbjct: 7 IKAFRSYVPLLQGNTKTIYLNQSFQAPMNMLVSTAL---QGYINEGLYNPHPKPMWKERT 63
Query: 636 LWKEGFRAEILNV*S-DSITF 695
A++LN + DSITF
Sbjct: 64 EETRSLLAKLLNASTKDSITF 84
>SPBC1105.03c |mrpl16||mitochondrial ribosomal protein subunit
L16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 215
Score = 28.3 bits (60), Expect = 1.1
Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 4/92 (4%)
Frame = +3
Query: 243 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGT----VARVRIGQ 410
K+L + ++ L P R+ C G GK +G AR+ IG+
Sbjct: 87 KQLETAEQILKRILKPIKAARVYTRF-CCNVPVCVKGNETRMGKGKGAFEYWAARIPIGR 145
Query: 411 PIMSVRSSDRWKAQVIEALRRAKFKFPGRQKI 506
+ + K AL++A F PG+ +I
Sbjct: 146 VLFEIGGDGMRKELAEHALKQAAFHLPGKYEI 177
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 28.3 bits (60), Expect = 1.1
Identities = 18/61 (29%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +1
Query: 37 YRYCKNKPYPKSRFCRGVPDP-KIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 213
Y+ N ++FC V + KI + +KRA +D LC+ +S + E ++ +LE+
Sbjct: 34 YQKVPNSHKEFTKFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLES 93
Query: 214 G 216
G
Sbjct: 94 G 94
>SPAC688.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1038
Score = 27.1 bits (57), Expect = 2.6
Identities = 24/74 (32%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Frame = -1
Query: 386 STLRLAKRTTHPSLEPISSSAR-*HFIDADNVERVKSHADMELILPQFFTRYLLQQIRPA 210
+T +LAKR T PSL P S+ H I + ++ KS A+ IL F + +Q
Sbjct: 957 TTTKLAKRITQPSLSPARSTVTITHNIATEAKKKSKSAAND--ILHLFKKKAKSEQSNAK 1014
Query: 209 SKASELSCSYSSDT 168
S +S + S T
Sbjct: 1015 SSSSSIKESKKMKT 1028
>SPBC1861.02 |abp2||ARS binding protein Abp2|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 527
Score = 27.1 bits (57), Expect = 2.6
Identities = 29/86 (33%), Positives = 40/86 (46%)
Frame = +2
Query: 50 KINRIRNRGSVGVYLIPRSVSSIWVRRERTLTTFHCACTWCPTNMNS*AQRLWRQDVSAA 229
KI R+R+ SV + L S+S W R L H T + + A RL + VS
Sbjct: 340 KIKRLRSEPSVSLTL---SIS--WYERFEKL--MHAQNTMLRSAFSHVA-RLPMETVSQL 391
Query: 230 ISTS*RTAEGSVPYPHETSPFPRYPH 307
+S T +P P ETSP P+ P+
Sbjct: 392 LSHYTETISQYLP-PSETSPIPKTPN 416
>SPCC24B10.20 |||short chain dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 254
Score = 26.2 bits (55), Expect = 4.6
Identities = 13/51 (25%), Positives = 23/51 (45%)
Frame = +3
Query: 516 RSGVSQSMNVMSLRSCVKRAAFANDGLHRAVPPGTWTSRTLWKEGFRAEIL 668
RS +M V + C+ + N G+ ++ P TS LW ++ +L
Sbjct: 68 RSAKDAAMQVEKVVKCID-VLWVNSGISKSFQPVLKTSDELWMSHYQTNVL 117
>SPBC1348.02 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 583 AKAALFTQLLKLITFILCETPLL*Y 509
+KA F ++L FI C +P+L Y
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHY 287
>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
1|||Manual
Length = 996
Score = 25.8 bits (54), Expect = 6.0
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -1
Query: 683 IRLYIEDLSPETFLPKRSRGPCSGRY 606
+RL IEDL F+ R RG + +Y
Sbjct: 862 VRLQIEDLPSNVFVTNRGRGSPADQY 887
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 6.0
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 70 SRFCRGVPDPKIRIFDLGKKRANVDDFP-LCVHLVSDE 180
S FC PDPK K A+ DD P + H+ S++
Sbjct: 84 SFFCTTTPDPKTESPSFVKYNAHCDDHPEISGHVSSND 121
>SPBPB2B2.19c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 583 AKAALFTQLLKLITFILCETPLL*Y 509
+KA F ++L FI C +P+L Y
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHY 287
>SPAC977.01 |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1||Partial|Manual
Length = 316
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 583 AKAALFTQLLKLITFILCETPLL*Y 509
+KA F ++L FI C +P+L Y
Sbjct: 235 SKARFFRRMLNAFIFIFCASPMLHY 259
>SPAC750.05c |||S. pombe specific 5Tm protein
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 344
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = -2
Query: 583 AKAALFTQLLKLITFILCETPLL*Y 509
+KA F ++L FI C +P+L Y
Sbjct: 263 SKARFFRRMLNAFIFIFCASPMLHY 287
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +1
Query: 115 DLGKKRANVDDFPLCVHLVSDEYEQL 192
++ KKRA DD + +VS EYE L
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENL 1058
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 25.4 bits (53), Expect = 8.0
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Frame = +1
Query: 94 DPKIRIFDLGKKRANVDDFPLCV-HLVSDEYEQLSSEALEA 213
DPK+R+F KRA + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 25.4 bits (53), Expect = 8.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +3
Query: 255 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 359
+D H+RM ++ FH IN MLS + D + MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890
>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 8.0
Identities = 15/60 (25%), Positives = 26/60 (43%)
Frame = -2
Query: 700 SRNVIESDYTLRISALKPSFQSVREVHVPGGTARCKPSLAKAALFTQLLKLITFILCETP 521
S + S++T +S P F + GG P L + F++ +IT +C+ P
Sbjct: 348 SNTSLFSNFTFFLSREVPRFSLEFVIRAFGGKVGWDPILGSGSPFSESDPVITHHICDRP 407
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 25.4 bits (53), Expect = 8.0
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +2
Query: 80 VGVYLIPRSVSSIWV 124
+GVYLIP++ S +W+
Sbjct: 394 IGVYLIPKAWSDLWL 408
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,103,903
Number of Sequences: 5004
Number of extensions: 65802
Number of successful extensions: 229
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 214
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 327172622
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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