Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30559
(704 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0740 + 6243517-6243526,6244822-6245323,6245415-6245496,624... 141 4e-34
05_01_0490 + 4083768-4083775,4083845-4084336,4084441-4084522,408... 138 4e-33
03_02_0897 - 12239375-12239458,12240035-12240116,12240213-122407... 135 4e-32
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 31 1.2
10_08_0141 + 15159160-15159306,15159708-15159815,15159958-151600... 29 2.7
09_06_0320 - 22297579-22297760,22298433-22299358,22299422-222997... 28 6.3
07_01_0158 + 1111819-1111972,1113311-1114869 28 6.3
06_03_1213 - 28463774-28464286 28 6.3
04_01_0289 + 3830052-3831134,3831141-3831230,3831494-3831525,383... 28 6.3
06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385 28 8.3
>11_01_0740 +
6243517-6243526,6244822-6245323,6245415-6245496,
6245741-6245821
Length = 224
Score = 141 bits (342), Expect = 4e-34
Identities = 61/82 (74%), Positives = 69/82 (84%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFPYCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGR 258
SSEALEA RI CNKY+ KN G+
Sbjct: 61 SSEALEAARIACNKYMTKNAGK 82
Score = 139 bits (337), Expect = 2e-33
Identities = 66/92 (71%), Positives = 74/92 (80%)
Frame = +3
Query: 243 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 422
K KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 78 KNAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 137
Query: 423 VRSSDRWKAQVIEALRRAKFKFPGRQKI*YQR 518
VR + EALRRAKFKFPGRQKI + R
Sbjct: 138 VRCKESNAKHAEEALRRAKFKFPGRQKIIHSR 169
Score = 30.7 bits (66), Expect = 1.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 488 PRTSKDLVSKKWGFTKYERDEF 553
P K + S+KWGFTK+ R+E+
Sbjct: 160 PGRQKIIHSRKWGFTKFTREEY 181
>05_01_0490 +
4083768-4083775,4083845-4084336,4084441-4084522,
4086671-4087357,4087555-4087813,4088435-4088558,
4089474-4089564
Length = 580
Score = 138 bits (334), Expect = 4e-33
Identities = 65/88 (73%), Positives = 71/88 (80%)
Frame = +3
Query: 243 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 422
K KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGKPQGT ARV IGQ ++S
Sbjct: 74 KSAGKDAFHLRVRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKPQGTCARVDIGQVLLS 133
Query: 423 VRSSDRWKAQVIEALRRAKFKFPGRQKI 506
VR EALRRAKFKFPGRQKI
Sbjct: 134 VRCKPNNAVHASEALRRAKFKFPGRQKI 161
Score = 119 bits (287), Expect = 2e-27
Identities = 51/75 (68%), Positives = 61/75 (81%)
Frame = +1
Query: 34 CYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEA 213
CYR KNKPYPKSR+CRGVPDPKIRI+D+G K+ VD+F CVHLVS E E ++SEALEA
Sbjct: 4 CYRQIKNKPYPKSRYCRGVPDPKIRIYDVGMKKKGVDEFSHCVHLVSWEKENVTSEALEA 63
Query: 214 GRICCNKYLVKNCGR 258
RI CNKY+ K+ G+
Sbjct: 64 ARIACNKYMTKSAGK 78
Score = 33.1 bits (72), Expect = 0.22
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 488 PRTSKDLVSKKWGFTKYERDEF 553
P K + S+KWGFTK+ RDE+
Sbjct: 156 PGRQKIIESRKWGFTKFSRDEY 177
>03_02_0897 -
12239375-12239458,12240035-12240116,12240213-12240714,
12241150-12241303,12241458-12241629,12242237-12242443,
12242926-12243323
Length = 532
Score = 135 bits (326), Expect = 4e-32
Identities = 63/88 (71%), Positives = 71/88 (80%)
Frame = +3
Query: 243 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 422
K KD FH+R+ HP+HV+RINKMLSCAGADRLQTGMRGAFGKP GT ARVRIGQ ++S
Sbjct: 385 KHAGKDAFHLRVCAHPYHVLRINKMLSCAGADRLQTGMRGAFGKPTGTCARVRIGQVLLS 444
Query: 423 VRSSDRWKAQVIEALRRAKFKFPGRQKI 506
VR D A EALRRAKFKFPGRQ++
Sbjct: 445 VRCRDANAAHAQEALRRAKFKFPGRQRV 472
Score = 134 bits (323), Expect = 9e-32
Identities = 57/78 (73%), Positives = 66/78 (84%)
Frame = +1
Query: 25 PARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEA 204
P RCYR KNKPYPKSR+CRGVPDPKIRIFD+G+K+ + DDFPLCVHLVS E E +SSEA
Sbjct: 312 PVRCYRQIKNKPYPKSRYCRGVPDPKIRIFDVGQKKRSADDFPLCVHLVSWEKENVSSEA 371
Query: 205 LEAGRICCNKYLVKNCGR 258
LEA RI CNKY+ K+ G+
Sbjct: 372 LEAARIACNKYMAKHAGK 389
Score = 30.3 bits (65), Expect = 1.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 488 PRTSKDLVSKKWGFTKYERDEF 553
P + + S KWGFT+++RDE+
Sbjct: 467 PGRQRVIFSAKWGFTRFKRDEY 488
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 30.7 bits (66), Expect = 1.2
Identities = 10/31 (32%), Positives = 21/31 (67%)
Frame = -2
Query: 415 MGCPMRTRATVP*GLPNAPRIPVWSLSAPAH 323
+ CP+ + + VP LP++P P++S ++P +
Sbjct: 1625 LSCPLTSPSYVPTSLPHSPTSPIYSATSPIY 1655
>10_08_0141 +
15159160-15159306,15159708-15159815,15159958-15160006,
15160067-15160182,15160358-15160399,15161026-15161442,
15162356-15162509,15162911-15162975,15163793-15163870,
15163951-15164061,15164227-15164271,15164677-15164850,
15165383-15166335,15166471-15166681,15167037-15167196,
15168786-15169174
Length = 1072
Score = 29.5 bits (63), Expect = 2.7
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Frame = +1
Query: 151 PLC-VHLVSDEYEQLSSEALEAGRICCNKYLVKNCG 255
P C +HL SD Y S E ++AG+ C L K G
Sbjct: 592 PRCDIHLKSDGYTNYSLETVQAGKQQCKAALQKELG 627
>09_06_0320 - 22297579-22297760,22298433-22299358,22299422-22299747,
22300591-22300660,22301632-22301726,22301917-22302048,
22302154-22302222,22302953-22303051,22303169-22303253,
22303353-22303453,22303660-22303728,22303861-22303901,
22304085-22304303,22304444-22304470,22304562-22304660,
22304898-22305106,22305382-22305485,22305753-22305894,
22305991-22306289,22306508-22306903
Length = 1229
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/23 (43%), Positives = 17/23 (73%)
Frame = +3
Query: 369 GKPQGTVARVRIGQPIMSVRSSD 437
G PQ T+ R+ +G P +S++S+D
Sbjct: 1089 GTPQQTLERLHVGHPTLSLQSND 1111
>07_01_0158 + 1111819-1111972,1113311-1114869
Length = 570
Score = 28.3 bits (60), Expect = 6.3
Identities = 15/55 (27%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Frame = +1
Query: 175 DEYEQLSSEALEAGRICCNKYLVKNC--GRISSISA*DFTL-STLSASIKCYRAL 330
D +++E +CC + K C G ++ I DF+L S + +++C+ AL
Sbjct: 334 DNLHSIATEWFRPNPVCCKHHDQKVCGSGNMNMIELPDFSLESVIQVNLQCHVAL 388
>06_03_1213 - 28463774-28464286
Length = 170
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = -1
Query: 512 ILDLLTSGELELGTAQSLDDLCLPPVTRAHGHDGLSNAN 396
+LD++ +G+L LG +L +P + A G DG+ A+
Sbjct: 88 LLDVMNAGQLGLGALGALLQSAVPALESAAGPDGVLGAD 126
>04_01_0289 +
3830052-3831134,3831141-3831230,3831494-3831525,
3833690-3834623
Length = 712
Score = 28.3 bits (60), Expect = 6.3
Identities = 13/32 (40%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Frame = +1
Query: 136 NVDDFPLCVHLVSDEYEQLSSEALEAGR-ICC 228
NV++ P + L+ DE +++ E L AGR I C
Sbjct: 679 NVEEIPTSMDLMKDENDKIQLEILTAGRNIAC 710
>06_02_0351 + 15067596-15067771,15067999-15068076,15069166-15069385
Length = 157
Score = 27.9 bits (59), Expect = 8.3
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = -1
Query: 518 SLILDLLTSGELELGTAQSLDDLCLPPVTRAHGH 417
+L+ +LLT E+ L T + LCLPP+ H
Sbjct: 4 TLVANLLTYWEVFLVTEFGMPTLCLPPIATYWSH 37
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,642,842
Number of Sequences: 37544
Number of extensions: 490135
Number of successful extensions: 1389
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1389
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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