Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30559
         (704 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)         84   1e-16
SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)          33   0.30 
SB_58466| Best HMM Match : DUF624 (HMM E-Value=2.1)                    32   0.52 
SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_4321| Best HMM Match : Ank (HMM E-Value=0)                          29   3.7  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              29   4.9  
SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.4  
SB_25504| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-07)                 28   6.4  
SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)               28   6.4  
SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)                     28   6.4  
SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)              28   8.5  
SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)              28   8.5  

>SB_47652| Best HMM Match : Ribosomal_L10e (HMM E-Value=0.0041)
          Length = 50

 Score = 83.8 bits (198), Expect = 1e-16
 Identities = 40/50 (80%), Positives = 43/50 (86%)
 Frame = +3

Query: 354 MRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIEALRRAKFKFPGRQK 503
           MRGAFGKPQGTVARV IGQ I+S+R+ D  KA  IEALRRAKFKFPGRQK
Sbjct: 1   MRGAFGKPQGTVARVNIGQTIISIRTKDGNKAAAIEALRRAKFKFPGRQK 50


>SB_21942| Best HMM Match : C4dic_mal_tran (HMM E-Value=0.053)
          Length = 659

 Score = 32.7 bits (71), Expect = 0.30
 Identities = 23/67 (34%), Positives = 30/67 (44%)
 Frame = -1

Query: 590 VIGEGGPLHAASQTHHVHTL*NPTSLILDLLTSGELELGTAQSLDDLCLPPVTRAHGHDG 411
           V+  GG L    Q H +    NP++     L+   LE  TA  +       V  A+  DG
Sbjct: 23  VMHPGGRLPVKRQLHLISAPVNPSTRFTPTLSRMSLETVTAAPIPTQTSRSVALAY--DG 80

Query: 410 LSNANTC 390
           LSNAN C
Sbjct: 81  LSNANVC 87


>SB_58466| Best HMM Match : DUF624 (HMM E-Value=2.1)
          Length = 174

 Score = 31.9 bits (69), Expect = 0.52
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = -2

Query: 670 LRISALKPSFQSVREVHVPGGTARCKPSLAKAALFTQLLKLITFILCETPL 518
           L  + ++   +S   +H+PG   + +    ++A    L  L+ F+LC TPL
Sbjct: 52  LNFAIIRKLVRSQEAIHIPGAQQQKRARRFRSATRIVLSSLLLFVLCATPL 102


>SB_28115| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 698

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -2

Query: 208 PKPLSSAVHIRRTPSARTVESRQRSLSSYPNRRYGSWDQ 92
           PK  SS V+  RT  AR    ++R++  Y  ++YG W Q
Sbjct: 295 PKFFSSIVYYGRT--ARFDYGKRRNMKRYGKKKYGKWRQ 331


>SB_4321| Best HMM Match : Ank (HMM E-Value=0)
          Length = 915

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 17/62 (27%), Positives = 26/62 (41%)
 Frame = +1

Query: 40  RYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGR 219
           R CK K   ++R C+G    + R+     K    D+  +C    SDE      E  +  R
Sbjct: 444 RMCKGKGRDETRMCKGEGTDETRMC----KSEGTDETRMCKDEGSDETRMCKDEGTDETR 499

Query: 220 IC 225
           +C
Sbjct: 500 MC 501


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 16/47 (34%), Positives = 19/47 (40%)
 Frame = -3

Query: 405 QCEHVLQYPEACQTHHASQSGAYQLQRTITFY*CG*RGKGEVSCGYG 265
           +C  V Q P AC   + S  GA +       Y C    K  V CG G
Sbjct: 535 KCPDVTQAPVACTNGYYSGDGATECTLCPAGYSCADATKSPVPCGKG 581


>SB_33920| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1278

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 2/49 (4%)
 Frame = -1

Query: 497 TSGELELGTAQSLDDLCLPPVTRAHGHDGLSNANT--CYSTLRLAKRTT 357
           ++G   + T     D+C+P   + HGH    +ANT  CY  +  A  +T
Sbjct: 73  SAGHYVVRTGNPFTDICIP--CQCHGHSDQCDANTGICYVRIYTADLST 119


>SB_25504| Best HMM Match : 7tm_1 (HMM E-Value=2.3e-07)
          Length = 326

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/51 (27%), Positives = 24/51 (47%)
 Frame = -2

Query: 670 LRISALKPSFQSVREVHVPGGTARCKPSLAKAALFTQLLKLITFILCETPL 518
           L  S +    +S   +H+P    + +    ++A    L  L+ F+LC TPL
Sbjct: 214 LNFSIILKLVRSQEAIHIPEAQQQKRARRFRSATRMVLSSLLLFVLCATPL 264


>SB_6123| Best HMM Match : MutS_III (HMM E-Value=1.8e-09)
          Length = 730

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/49 (28%), Positives = 25/49 (51%)
 Frame = -1

Query: 311 IDADNVERVKSHADMELILPQFFTRYLLQQIRPASKASELSCSYSSDTK 165
           + A+ V+R+ SH  M+ +  +    Y     +PA+K + L C Y+   K
Sbjct: 16  LTAERVQRLLSHTRMKEV-SRICKVYFSSDTKPAAKTNNLLCQYNEIKK 63


>SB_37809| Best HMM Match : NADH5_C (HMM E-Value=3)
          Length = 1165

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = -2

Query: 682 SDYTLRISALKPSFQSVREVHVPGGTARCKPSLAKAALFTQLLKLITFILCETPLL 515
           SD  L    + P F   R V++  GT     S  + +L + ++ L+TF   E PLL
Sbjct: 127 SDDFLPFVQVPPDFS--RPVNLGSGTQVVLKSTGEQSLLSSIMSLVTFSPAEPPLL 180


>SB_25165| Best HMM Match : Prominin (HMM E-Value=1.1e-05)
          Length = 726

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 362 CVWQASGYCSTCSHWTTHHV 421
           C W  +G C  C HW   HV
Sbjct: 79  CYWIRTGCCHLCWHWRPLHV 98


>SB_14136| Best HMM Match : Exonuc_X-T (HMM E-Value=6e-25)
          Length = 1597

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -3

Query: 180 FVGHQVHAQWKVVNVRSLLTQIEDTDLGIRYTPTEPRFRIRFI 52
           FVGH +   ++V+N+     Q+ DT +G+ + P +    +RF+
Sbjct: 465 FVGHGLKKDFRVINILVPKGQVFDT-VGLFHLPRQRYLSLRFL 506


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,288,091
Number of Sequences: 59808
Number of extensions: 536848
Number of successful extensions: 1847
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1660
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1844
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1853669818
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)