Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30559
(704 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 156 1e-38
Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical pr... 29 4.3
AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like pro... 29 4.3
Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical pr... 28 5.7
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 28 5.7
AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical ... 28 7.5
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def... 27 9.9
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def... 27 9.9
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein. 27 9.9
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 156 bits (379), Expect = 1e-38
Identities = 68/82 (82%), Positives = 73/82 (89%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 192
MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRANVD FP CVH++S+E E L
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60
Query: 193 SSEALEAGRICCNKYLVKNCGR 258
SSEALEA RIC NKY+VKNCG+
Sbjct: 61 SSEALEAARICANKYMVKNCGK 82
Score = 126 bits (304), Expect = 2e-29
Identities = 61/88 (69%), Positives = 67/88 (76%)
Frame = +3
Query: 243 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 422
K KD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+GKPQG VARV IG + S
Sbjct: 78 KNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYGKPQGLVARVDIGDILFS 137
Query: 423 VRSSDRWKAQVIEALRRAKFKFPGRQKI 506
+R + IEA RRAKFKFPGRQ I
Sbjct: 138 MRIKEGNVKHAIEAFRRAKFKFPGRQII 165
Score = 28.3 bits (60), Expect = 5.7
Identities = 8/14 (57%), Positives = 14/14 (100%)
Frame = +2
Query: 512 SKKWGFTKYERDEF 553
S+KWGFTK++R+++
Sbjct: 168 SRKWGFTKWDREDY 181
>Z66511-7|CAD57693.1| 567|Caenorhabditis elegans Hypothetical
protein F07A11.6d protein.
Length = 567
Score = 28.7 bits (61), Expect = 4.3
Identities = 17/41 (41%), Positives = 21/41 (51%)
Frame = -1
Query: 446 LPPVTRAHGHDGLSNANTCYSTLRLAKRTTHPSLEPISSSA 324
+P VT A + LSN T ST LA T +L P+S A
Sbjct: 46 VPVVTTASTPNPLSNLETLLSTASLANLATGGALNPLSMLA 86
>AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like
protein 2 protein.
Length = 205
Score = 28.7 bits (61), Expect = 4.3
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +1
Query: 73 RFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQLSSEALEAGR 219
R C + K I D K+ A ++ + +++ EYEQ++S +AG+
Sbjct: 93 RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141
>Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical
protein F01G10.1 protein.
Length = 618
Score = 28.3 bits (60), Expect = 5.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 357 RGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 503
R GKP +A+ G+ I + + D W + + + K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 28.3 bits (60), Expect = 5.7
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = -2
Query: 376 GLPNAPRIPVWSLSAPA 326
G PN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>AF039053-3|AAC25880.2| 349|Caenorhabditis elegans Hypothetical
protein C45H4.13 protein.
Length = 349
Score = 27.9 bits (59), Expect = 7.5
Identities = 18/48 (37%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Frame = -1
Query: 257 LPQFFTRYLLQQIRPA--SKASELSCSYSSDTKCTHSGKSSTFALFLP 120
L +FF +L Q+IR A S S S S SS + S SS+++ + P
Sbjct: 212 LMEFFRYFLTQRIRHARDSSGSHESYSGSSSSSSYSSSDSSSYSSYTP 259
>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
protein 1, isoformb protein.
Length = 1437
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 135 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 34
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628
>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
protein 1, isoforma protein.
Length = 1435
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 135 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 34
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 593 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 628
>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
Length = 1018
Score = 27.5 bits (58), Expect = 9.9
Identities = 14/36 (38%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
Frame = -3
Query: 135 RSLLTQIED--TDLGIRYTPTEPRFRIRFIFAVPVA 34
RS + IE +D+ + TP +P+ +F+F VPVA
Sbjct: 176 RSYMKLIETAISDILLHRTPIDPQADYKFVFEVPVA 211
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,540,627
Number of Sequences: 27780
Number of extensions: 386258
Number of successful extensions: 1056
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1013
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1056
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1634564590
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -