Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30559
(704 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C) cont... 141 4e-34
At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) / Wi... 140 8e-34
At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Near... 140 1e-33
At1g33410.1 68414.m04136 expressed protein 29 2.3
At5g47870.1 68418.m05914 expressed protein 29 4.0
At4g24120.1 68417.m03462 transporter, putative similar to iron-p... 29 4.0
At3g59190.1 68416.m06599 F-box family protein contains F-box dom... 29 4.0
At5g24280.1 68418.m02856 expressed protein ; expression supporte... 28 5.2
At5g10240.1 68418.m01189 asparagine synthetase 3 (ASN3) identica... 28 6.9
At3g47340.3 68416.m05147 asparagine synthetase 1 [glutamine-hydr... 28 6.9
At3g47340.2 68416.m05146 asparagine synthetase 1 [glutamine-hydr... 28 6.9
At3g47340.1 68416.m05145 asparagine synthetase 1 [glutamine-hydr... 28 6.9
At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-pa... 27 9.2
At1g19510.1 68414.m02430 myb family transcription factor contain... 27 9.2
>At1g66580.1 68414.m07565 60S ribosomal protein L10 (RPL10C)
contains Pfam profile: PF00826: Ribosomal L10
Length = 221
Score = 141 bits (342), Expect = 4e-34
Identities = 76/143 (53%), Positives = 91/143 (63%), Gaps = 10/143 (6%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGRIS---SISA*DFTLSTLSASIKCYRALEL-------IG 342
SSEALEA RI CNKY+VK+ G+ + I F + ++ + C A L G
Sbjct: 61 SSEALEAARIACNKYMVKSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFG 120
Query: 343 SRLGCVVRLASLRVL*HVFALDN 411
LG R+A +VL V DN
Sbjct: 121 KALGTCARVAIGQVLLSVRCKDN 143
Score = 135 bits (327), Expect = 2e-32
Identities = 64/88 (72%), Positives = 70/88 (79%)
Frame = +3
Query: 243 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 422
K KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 423 VRSSDRWKAQVIEALRRAKFKFPGRQKI 506
VR D EALRRAKFKFPGRQKI
Sbjct: 138 VRCKDNHGVHAQEALRRAKFKFPGRQKI 165
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 488 PRTSKDLVSKKWGFTKYERDEF 553
P K +VS+KWGFTK+ R E+
Sbjct: 160 PGRQKIIVSRKWGFTKFNRAEY 181
>At1g14320.1 68414.m01697 60S ribosomal protein L10 (RPL10A) /
Wilm's tumor suppressor protein-related similar to tumor
suppressor GI:575354 from [Oryza sativa]
Length = 220
Score = 140 bits (339), Expect = 8e-34
Identities = 61/82 (74%), Positives = 69/82 (84%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPFCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGR 258
SSEALEA RI CNKY+VK+ G+
Sbjct: 61 SSEALEAARIACNKYMVKSAGK 82
Score = 134 bits (324), Expect = 5e-32
Identities = 64/88 (72%), Positives = 70/88 (79%)
Frame = +3
Query: 243 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 422
K KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 423 VRSSDRWKAQVIEALRRAKFKFPGRQKI 506
VR D EALRRAKFKFPGRQKI
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKI 165
Score = 32.3 bits (70), Expect = 0.32
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +2
Query: 488 PRTSKDLVSKKWGFTKYERDEF 553
P K +VS+KWGFTK+ R +F
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADF 181
>At1g26910.1 68414.m03281 60S ribosomal protein L10 (RPL10B) Nearly
identical to ribosomal protein L10.e, Wilm's tumor
suppressor homologue, gi|17682 (Z15157), however
differences in sequence indicate this is a different
member of the L10 family
Length = 221
Score = 140 bits (338), Expect = 1e-33
Identities = 61/82 (74%), Positives = 69/82 (84%)
Frame = +1
Query: 13 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRANVDDFPLCVHLVSDEYEQL 192
MGRRPARCYR K KPYPKSR+CRGVPDPKIRI+D+G KR VD+FP CVHLVS E E +
Sbjct: 1 MGRRPARCYRQIKGKPYPKSRYCRGVPDPKIRIYDVGMKRKGVDEFPYCVHLVSWEKENV 60
Query: 193 SSEALEAGRICCNKYLVKNCGR 258
SSEALEA RI CNKY+VK+ G+
Sbjct: 61 SSEALEAARIACNKYMVKSAGK 82
Score = 134 bits (324), Expect = 5e-32
Identities = 64/88 (72%), Positives = 70/88 (79%)
Frame = +3
Query: 243 KELRKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMS 422
K KD FH+R+R+HPFHV+RINKMLSCAGADRLQTGMRGAFGK GT ARV IGQ ++S
Sbjct: 78 KSAGKDAFHLRIRVHPFHVLRINKMLSCAGADRLQTGMRGAFGKALGTCARVAIGQVLLS 137
Query: 423 VRSSDRWKAQVIEALRRAKFKFPGRQKI 506
VR D EALRRAKFKFPGRQKI
Sbjct: 138 VRCKDAHGHHAQEALRRAKFKFPGRQKI 165
Score = 31.1 bits (67), Expect = 0.74
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +2
Query: 488 PRTSKDLVSKKWGFTKYERDEF 553
P K +VS+KWGFTK+ R ++
Sbjct: 160 PGRQKIIVSRKWGFTKFNRADY 181
>At1g33410.1 68414.m04136 expressed protein
Length = 1459
Score = 29.5 bits (63), Expect = 2.3
Identities = 20/64 (31%), Positives = 34/64 (53%), Gaps = 4/64 (6%)
Frame = +1
Query: 94 DP-KIRIFDLGKKRANVDDFPLCVHLVSDEY-EQLSSEALEAGRICCNKYLVK--NCGRI 261
DP K + G+ ANV F L ++L++D Y +S+ E RIC ++++ CG+
Sbjct: 979 DPTKAATYTRGRLWANVFKFTLDLNLLNDAYCAIISNPDEEIKRICLRRFIIVLFECGKT 1038
Query: 262 SSIS 273
+S
Sbjct: 1039 KILS 1042
>At5g47870.1 68418.m05914 expressed protein
Length = 199
Score = 28.7 bits (61), Expect = 4.0
Identities = 20/73 (27%), Positives = 30/73 (41%)
Frame = +3
Query: 273 RMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSVRSSDRWKAQ 452
R++L PF + +N+ + C+G G+ G + V PI SS
Sbjct: 23 RIKLSPFRTVAVNRGVRCSGG-----GVGGGDAGKKKAVPNSNYVVPIDKFSSSSSITRP 77
Query: 453 VIEALRRAKFKFP 491
+IE LR K P
Sbjct: 78 LIEILRDLNKKIP 90
>At4g24120.1 68417.m03462 transporter, putative similar to
iron-phytosiderophore transporter protein yellow stripe
1 [Zea mays] GI:10770865; contains Pfam profile PF03169:
OPT oligopeptide transporter protein
Length = 665
Score = 28.7 bits (61), Expect = 4.0
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Frame = +1
Query: 238 LVKNCGRISSISA*DF-TLSTLSASIKCYRALELIGSRLGCVVRLASLRVL*HVFALDNP 414
L+K+ +S I DF T S K A ++IG+ +GC+V S + F + NP
Sbjct: 468 LIKSVVSVSCILMQDFKTAHYTMTSPKAMFASQMIGTVVGCIVTPLSFFLFYKAFDIGNP 527
Query: 415 S 417
+
Sbjct: 528 N 528
>At3g59190.1 68416.m06599 F-box family protein contains F-box domain
Pfam:PF00646
Length = 388
Score = 28.7 bits (61), Expect = 4.0
Identities = 18/36 (50%), Positives = 19/36 (52%)
Frame = +1
Query: 127 KRANVDDFPLCVHLVSDEYEQLSSEALEAGRICCNK 234
K AN DF + V V Y LSSEALE CC K
Sbjct: 297 KGANAADFMMGVCNVKTMY--LSSEALEVLTFCCKK 330
>At5g24280.1 68418.m02856 expressed protein ; expression supported by
MPSS
Length = 1634
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +1
Query: 172 SDEYEQLSSEALEAGRICCNKYLV 243
SDEY + SEA GR N++LV
Sbjct: 1431 SDEYRKFQSEAASLGRSITNRFLV 1454
>At5g10240.1 68418.m01189 asparagine synthetase 3 (ASN3) identical
to asparagine synthetase (ASN3) [Arabidopsis thaliana]
GI:3859534
Length = 578
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 156 VRALGVRRI*TAELRG--FGGRTYLLQ*VPRKELRKDQFHIRMRLHPFHVIRINKMLSCA 329
+++LGV+ + + E FGG Y + +KE ++ LH + +R NK S
Sbjct: 331 IKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKKEFHEETCRKIKALHQYDCLRANKSTSAW 390
Query: 330 GAD 338
G +
Sbjct: 391 GVE 393
>At3g47340.3 68416.m05147 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 456
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 156 VRALGVRRI*TAELRG--FGGRTYLLQ*VPRKELRKDQFHIRMRLHPFHVIRINKMLSCA 329
+++LGV+ + + E FGG Y + +KE ++ LH + +R NK S
Sbjct: 331 IKSLGVKMVLSGEGADEIFGGYLYFHKAPNKKEFHQETCRKIKALHKYDCLRANKSTSAF 390
Query: 330 GAD 338
G +
Sbjct: 391 GLE 393
>At3g47340.2 68416.m05146 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 512
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 156 VRALGVRRI*TAELRG--FGGRTYLLQ*VPRKELRKDQFHIRMRLHPFHVIRINKMLSCA 329
+++LGV+ + + E FGG Y + +KE ++ LH + +R NK S
Sbjct: 331 IKSLGVKMVLSGEGADEIFGGYLYFHKAPNKKEFHQETCRKIKALHKYDCLRANKSTSAF 390
Query: 330 GAD 338
G +
Sbjct: 391 GLE 393
>At3g47340.1 68416.m05145 asparagine synthetase 1
[glutamine-hydrolyzing] / glutamine-dependent asparagine
synthetase 1 (ASN1) identical to SP|P49078 Asparagine
synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
(Glutamine- dependent asparagine synthetase)
{Arabidopsis thaliana}
Length = 584
Score = 27.9 bits (59), Expect = 6.9
Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +3
Query: 156 VRALGVRRI*TAELRG--FGGRTYLLQ*VPRKELRKDQFHIRMRLHPFHVIRINKMLSCA 329
+++LGV+ + + E FGG Y + +KE ++ LH + +R NK S
Sbjct: 331 IKSLGVKMVLSGEGADEIFGGYLYFHKAPNKKEFHQETCRKIKALHKYDCLRANKSTSAF 390
Query: 330 GAD 338
G +
Sbjct: 391 GLE 393
>At3g54230.1 68416.m05994 zinc finger protein-related / D111/G-patch
domain-containing protein / RNA recognition motif
(RRM)-containing protein KIAA0122 gene , Homo sapiens,
EMBL:HSDKG02; contains Pfam profiles PF00076: RNA
recognition motif. (a.k.a. RRM, RBD, or RNP domain),
PF01585: G-patch domain, weak hit to PF00641: Zn-finger
in Ran binding protein and others
Length = 1105
Score = 27.5 bits (58), Expect = 9.2
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Frame = -2
Query: 121 PNRRYG-SWDQVHPDRTSISDTVYFCSTGSISLAGAP 14
PN R+G S+D +PD + D VY G +L P
Sbjct: 53 PNHRFGVSYDDGYPDERLMRDDVYNYPPGHNTLGDLP 89
>At1g19510.1 68414.m02430 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 100
Score = 27.5 bits (58), Expect = 9.2
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +1
Query: 88 VPDPKIRIFDLGKKRANVDDFPL 156
VP PK + D+G K +DDF L
Sbjct: 69 VPLPKYKTVDVGSKSRGIDDFDL 91
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,684,641
Number of Sequences: 28952
Number of extensions: 364918
Number of successful extensions: 1068
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1516419560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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