Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30558
(726 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces p... 144 1e-35
SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces p... 38 0.001
SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyc... 29 0.51
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 27 2.7
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S... 26 4.8
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom... 25 8.3
SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces ... 25 8.3
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c... 25 8.3
>SPAC14C4.14 |atp1||F1-ATPase alpha subunit|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 536
Score = 144 bits (348), Expect = 1e-35
Identities = 66/87 (75%), Positives = 78/87 (89%)
Frame = +2
Query: 254 LSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRT 433
LSIGDGIAR+ GL N+QAEE+VEFSSG+KGMALNLE D VG V+FGND+L++EG++VKRT
Sbjct: 60 LSIGDGIARISGLSNVQAEELVEFSSGIKGMALNLEADTVGCVLFGNDRLVREGEVVKRT 119
Query: 434 GAIVDVPVGEQILGRVVDALGNPIDAR 514
IVDVPVGE +LGRVVDALGNPID +
Sbjct: 120 RHIVDVPVGEALLGRVVDALGNPIDGK 146
Score = 65.3 bits (152), Expect = 8e-12
Identities = 31/41 (75%), Positives = 35/41 (85%)
Frame = +3
Query: 573 PVISVR*PMQTGIKAVDSLVPIGRGQRELIICDRQTGKNAL 695
P SV PMQTG+KA+DS+VPIGRGQRELII DRQTGK A+
Sbjct: 166 PRTSVCEPMQTGLKAIDSMVPIGRGQRELIIGDRQTGKTAI 206
Score = 33.1 bits (72), Expect = 0.042
Identities = 16/32 (50%), Positives = 19/32 (59%)
Frame = +1
Query: 493 GKPY*CKGPIDTKSRMRVGIKAPGIISP*FLC 588
G P KGPI T R RV +KAPGI+ +C
Sbjct: 140 GNPIDGKGPIKTTERRRVQLKAPGILPRTSVC 171
Score = 30.3 bits (65), Expect = 0.29
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +3
Query: 180 EISTILEERILGAAPKADLEETGRV 254
E+ +ILEERI GA +A + E+GRV
Sbjct: 35 EVPSILEERIRGAYNQAQMMESGRV 59
>SPAC222.12c |atp2||F1-ATPase beta subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 525
Score = 37.9 bits (84), Expect = 0.001
Identities = 16/46 (34%), Positives = 29/46 (63%)
Frame = +2
Query: 377 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDAR 514
+ + G + L++ G V TG+ + +PVG LGR+++ +G P+D R
Sbjct: 108 IAMDGTEGLVR-GTAVIDTGSPISIPVGPGTLGRIMNVIGEPVDER 152
>SPAC637.05c |vma2||V-type ATPase V1 subunit B |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 503
Score = 29.5 bits (63), Expect = 0.51
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = +2
Query: 431 TGAIVDVPVGEQILGRVVDALGNPID 508
TG + +PV E +LGRV + G PID
Sbjct: 92 TGHSMRIPVSEDMLGRVFNGSGLPID 117
Score = 25.4 bits (53), Expect = 8.3
Identities = 10/19 (52%), Positives = 14/19 (73%)
Frame = +3
Query: 597 MQTGIKAVDSLVPIGRGQR 653
+QTGI ++D L I RGQ+
Sbjct: 147 IQTGISSIDGLNSIARGQK 165
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 27.1 bits (57), Expect = 2.7
Identities = 22/90 (24%), Positives = 37/90 (41%)
Frame = -3
Query: 520 LVPCINRVSQSVYYTPKDLLSDGNVYDSTSTLDNISFFDKLVITKYYHTHIVRFQVKGHS 341
++PC+ + VY+T L GN N+ FDK I +FQ G+
Sbjct: 807 VLPCVPFLG--VYFTDLTFLKTGN----KDNFQNMINFDKRTKVTRILNEIKKFQSVGYM 860
Query: 340 LEA*GELHHLLSLDVLQAINTSDTITNAQT 251
E+ LL+ + + NT++ + T
Sbjct: 861 FNPINEVQELLNEVISRERNTNNIYQRSLT 890
>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 690
Score = 26.2 bits (55), Expect = 4.8
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +2
Query: 236 RRDWSCLSIGDGIARVYGLKNIQAEEMVEFS 328
RRDW+CL +G GI GL+N+ + ++ +FS
Sbjct: 157 RRDWTCLDLG-GI----GLRNV-STDLFKFS 181
>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 375
Score = 25.4 bits (53), Expect = 8.3
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +3
Query: 609 IKAVDSLVPIGRGQRELIICDRQTGKNALGY 701
+K VD PIG G R + D + G A+GY
Sbjct: 258 VKHVDKGQPIGYGGRYVATRDMKLGVVAMGY 288
>SPCC1281.05 |rsc7||RSC complex subunit Rsc7|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 390
Score = 25.4 bits (53), Expect = 8.3
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = -1
Query: 480 TRPRICSPTGTSTIAP 433
TRPR+ +P+ +ST+ P
Sbjct: 55 TRPRVSAPSSSSTVVP 70
>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 819
Score = 25.4 bits (53), Expect = 8.3
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 139 HLANYMSQPPTKLPRSPPSSKRGSLEP 219
H +Y+S P SPP+SK S EP
Sbjct: 113 HQNDYISSPHADFSFSPPASKIQSHEP 139
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,109
Number of Sequences: 5004
Number of extensions: 62511
Number of successful extensions: 160
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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