Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30558
         (726 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0138 - 1051408-1051625,1052790-1052889,1053724-1054085,105...    35   0.076
01_06_0458 + 29531069-29531126,29531247-29531302,29531407-295315...    35   0.076
06_03_0510 - 21615724-21615909,21615992-21616075,21616164-216162...    34   0.100
12_01_0899 - 8689125-8689383,8689540-8689826                           33   0.31 
03_02_0308 - 7297228-7298008,7298495-7298576,7298612-7298669,729...    31   0.93 
02_03_0049 + 14421408-14421942,14421988-14422842,14423847-144241...    31   1.2  
07_01_1078 - 9707125-9707640,9708091-9708306,9708312-9709685,970...    30   1.6  
08_01_0722 + 6412654-6412860,6413142-6413687,6413745-6413877,641...    30   2.2  
05_03_0313 + 12200743-12200955,12201238-12201622,12201997-122022...    29   2.8  
03_06_0376 + 33479776-33479958,33481055-33481236,33481345-334814...    29   2.8  
12_02_0305 - 17235832-17236379,17237345-17237444                       29   3.8  
12_02_0396 + 18577574-18578056,18578094-18578723                       28   6.6  
09_03_0040 + 11816056-11819069,11819837-11820428                       28   6.6  
07_01_0711 + 5374717-5374992,5375022-5375277,5375317-5375384,537...    28   6.6  
08_02_0361 - 16205476-16205727                                         28   8.7  
05_03_0577 + 15671570-15672432,15672571-15672785,15672825-156729...    28   8.7  
04_01_0319 - 4291144-4293402                                           28   8.7  
03_02_0740 - 10836752-10837052,10837756-10837814,10837901-108384...    28   8.7  
02_02_0096 - 6727844-6727957,6728149-6728247,6728332-6728410,672...    28   8.7  
01_01_1195 - 9567023-9567789,9567871-9568120                           28   8.7  

>06_01_0138 -
           1051408-1051625,1052790-1052889,1053724-1054085,
           1055055-1055079
          Length = 234

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 15/45 (33%), Positives = 25/45 (55%)
 Frame = +2

Query: 194 PRREDPWSRAQG*SRRDWSCLSIGDGIARVYGLKNIQAEEMVEFS 328
           P +  PW R Q  S+RD     +GDG+ ++ G+ +    ++VE S
Sbjct: 69  PSKRPPWQRPQPPSQRDAPATDVGDGLTKLRGVDDGGYMDVVELS 113


>01_06_0458 +
           29531069-29531126,29531247-29531302,29531407-29531505,
           29531989-29532048,29532285-29532396,29532459-29532694,
           29533092-29533220,29533325-29533462,29534043-29534193,
           29534394-29534476,29534658-29534705,29534828-29534881,
           29534971-29535054,29535152-29535337
          Length = 497

 Score = 34.7 bits (76), Expect = 0.076
 Identities = 19/58 (32%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 338 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPID 508
           +G  L ++ +   V VF G   +  +   V+ TG ++  PV   +LGRV +  G PID
Sbjct: 57  RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRVFNGSGKPID 114


>06_03_0510 -
           21615724-21615909,21615992-21616075,21616164-21616217,
           21616324-21616371,21616529-21616611,21616963-21617113,
           21617648-21617785,21617966-21618094,21618391-21618596,
           21618734-21618845,21619145-21619204,21619331-21619429,
           21619520-21619575,21620230-21620313,21621407-21621500
          Length = 527

 Score = 34.3 bits (75), Expect = 0.100
 Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
 Frame = +2

Query: 338 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPID 508
           +G  L ++ +   V VF G   +  +   V+ TG ++  PV   +LGR+ +  G PID
Sbjct: 97  RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPID 154


>12_01_0899 - 8689125-8689383,8689540-8689826
          Length = 181

 Score = 32.7 bits (71), Expect = 0.31
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +1

Query: 100 PRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEPRPRLI*KRLV 249
           P C R   P+ PW +A    +PP      PP+   G+   RP L   +LV
Sbjct: 38  PPCARLLLPEPPWGMAALPPEPPWGAAAHPPAPHWGAGPSRPALPSSKLV 87


>03_02_0308 -
           7297228-7298008,7298495-7298576,7298612-7298669,
           7298723-7298835,7298924-7299034,7299480-7299597,
           7299706-7299809,7300570-7300665,7301806-7302307
          Length = 654

 Score = 31.1 bits (67), Expect = 0.93
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
 Frame = -2

Query: 380 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSSSHKHERY--HHQCSDT 249
           PH   Q P   P P      PP  +P  S+SH H R+  HH  SD+
Sbjct: 110 PHHQQQGPGASPSP---PPPPPRGRPSFSASHSHHRHGGHHHRSDS 152


>02_03_0049 +
           14421408-14421942,14421988-14422842,14423847-14424151,
           14424469-14424984
          Length = 736

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 15/36 (41%), Positives = 19/36 (52%)
 Frame = +1

Query: 97  LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKR 204
           +PR + WR P     LA  + QP  K P S P SK+
Sbjct: 412 MPRNRYWRTPVKSPVLAKKLEQPAQKRPSSAPKSKK 447


>07_01_1078 -
           9707125-9707640,9708091-9708306,9708312-9709685,
           9709704-9710044,9710120-9710198
          Length = 841

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 97  LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKRG 207
           +P+ + WR P      +  + QP  K P SPP SK+G
Sbjct: 635 MPKNRYWRTPVKSPVPSMKLEQPAQKKPSSPPKSKKG 671


>08_01_0722 +
           6412654-6412860,6413142-6413687,6413745-6413877,
           6413917-6414035,6414128-6414883,6415209-6415258,
           6415560-6416679
          Length = 976

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 15/41 (36%), Positives = 20/41 (48%)
 Frame = +1

Query: 97  LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKRGSLEP 219
           +PR + WR P  P   A  + Q   K P SPP  K+  + P
Sbjct: 552 MPRNRYWRLPVKPPIPAKKLEQLAQKKPPSPPKPKKPKVGP 592


>05_03_0313 +
           12200743-12200955,12201238-12201622,12201997-12202274,
           12202359-12202976
          Length = 497

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +1

Query: 97  LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKR 204
           +P+ + W+ P  P  LA  + QP  K P S P  K+
Sbjct: 440 MPKNRYWKMPVEPPILAKKLEQPAQKKPPSAPKPKK 475


>03_06_0376 +
           33479776-33479958,33481055-33481236,33481345-33481469,
           33481858-33482057,33482629-33482762,33483095-33483158,
           33483764-33484441,33484723-33484839
          Length = 560

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = -3

Query: 508 INRVSQSVYYTPKDLLSDGNVYDSTSTLDNISFFD 404
           +N  +   Y+ PKDL S  + Y  T+  D I++FD
Sbjct: 138 VNETTMVRYWGPKDLSSLVDFYKETTGFDPIAYFD 172


>12_02_0305 - 17235832-17236379,17237345-17237444
          Length = 215

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +1

Query: 157 SQPPTKLPRSPPSSKRGSLEPRPRLI 234
           SQPPT  P  PP+   GS  PR  +I
Sbjct: 114 SQPPTIAPTQPPTPSGGSQCPRENVI 139


>12_02_0396 + 18577574-18578056,18578094-18578723
          Length = 370

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +1

Query: 97  LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKR 204
           +PR + WR P  P   A  + QP  + P S P  K+
Sbjct: 313 MPRNRYWRTPVKPSTPAKKLEQPAQRKPPSAPKPKK 348


>09_03_0040 + 11816056-11819069,11819837-11820428
          Length = 1201

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 17/42 (40%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 535  GISCRLVP-CINRVSQSVYYTPKDLLSDGNVYDSTSTLDNIS 413
            G SCR  P C NRVSQ     P ++   GN      +L +IS
Sbjct: 1001 GPSCRCPPTCHNRVSQHGIKIPLEIFKTGNKGWGVRSLSSIS 1042


>07_01_0711 +
           5374717-5374992,5375022-5375277,5375317-5375384,
           5375556-5376287,5377013-5377270
          Length = 529

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +1

Query: 97  LPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKRGS 210
           +PR + W+ P      A  + QP  + P S P  K+GS
Sbjct: 409 MPRNRYWKTPVKSSTPAKKLEQPAQRKPSSAPKPKKGS 446


>08_02_0361 - 16205476-16205727
          Length = 83

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = -1

Query: 222 ARLQGSSLRGWWRSRQLCGWL 160
           A L G  +  WWR R   GWL
Sbjct: 12  ASLGGGGVELWWRRRSAAGWL 32


>05_03_0577 +
           15671570-15672432,15672571-15672785,15672825-15672954,
           15672990-15673794,15674505-15674715,15674829-15675436
          Length = 943

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +1

Query: 94  LLPRCQRWRYPQWPWHLANYMSQPPTKLPRSPPSSKRGS 210
           ++PR + W+ P  P   A  + Q   K P S P  ++GS
Sbjct: 635 MMPRNRYWKTPVKPPIPAKKLEQSAQKKPPSAPKPRKGS 673


>04_01_0319 - 4291144-4293402
          Length = 752

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 6/31 (19%)
 Frame = -1

Query: 219 RLQGSSLRGWWRSRQL-----CGWLRH-VVC 145
           R   SS  G+W  R+L     CGW+RH V+C
Sbjct: 339 RALASSWTGFWLDRELRPVWGCGWIRHEVLC 369


>03_02_0740 -
           10836752-10837052,10837756-10837814,10837901-10838476,
           10839965-10841686,10841776-10842173,10842264-10842318,
           10842989-10843048,10843444-10843540,10844885-10844955,
           10845029-10845109,10846054-10846124,10847951-10848119,
           10848521-10848683,10848752-10848942,10849037-10849168
          Length = 1381

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +1

Query: 79  GACLMLLPRCQRWRYPQWPWHLANYMSQPPTKL-PRSPPSSKRGSLEPRPR 228
           G+ ++ +PR +R       W  A ++  PP  + P+ P    R   +P PR
Sbjct: 149 GSAIIWVPRSRRSHGKVGRWTRAYHLKVPPPPMAPQPPRGGPRQRYQPTPR 199


>02_02_0096 -
           6727844-6727957,6728149-6728247,6728332-6728410,
           6728534-6728634,6728740-6728808,6729180-6729220,
           6729992-6730836,6730924-6731027,6731479-6732354
          Length = 775

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +2

Query: 434 GAIVDVPVGEQILGRVVDALGNPIDARDQSTR 529
           G +    + ++I   VVDA+G P+D  D+  R
Sbjct: 225 GGVASPELVQKIANLVVDAMGGPVDDADEMNR 256


>01_01_1195 - 9567023-9567789,9567871-9568120
          Length = 338

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/22 (50%), Positives = 12/22 (54%)
 Frame = -2

Query: 320 PPSPQPGCSSSHKHERYHHQCS 255
           PP PQP  +  H H RY  Q S
Sbjct: 176 PPPPQPVVALHHHHHRYSQQYS 197


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,309,644
Number of Sequences: 37544
Number of extensions: 498126
Number of successful extensions: 1597
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1501
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1593
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)