Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30558
         (726 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)             112   2e-25
SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)                38   0.006
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.95 
SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   5.1  
SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.7  

>SB_55653| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 390

 Score =  112 bits (270), Expect = 2e-25
 Identities = 52/57 (91%), Positives = 56/57 (98%)
 Frame = +2

Query: 344 MALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDAR 514
           MALNLEPDNVGVVVFGND+LIKEGDIVKRTGAIVDVPVGE++LGRVVDALGNPID +
Sbjct: 1   MALNLEPDNVGVVVFGNDRLIKEGDIVKRTGAIVDVPVGEELLGRVVDALGNPIDGK 57



 Score = 66.5 bits (155), Expect = 2e-11
 Identities = 33/41 (80%), Positives = 35/41 (85%)
 Frame = +3

Query: 573 PVISVR*PMQTGIKAVDSLVPIGRGQRELIICDRQTGKNAL 695
           P  SV+ PM TGIKAVDSLVPIGRGQRELII DRQTGK A+
Sbjct: 76  PRTSVKEPMLTGIKAVDSLVPIGRGQRELIIGDRQTGKTAI 116



 Score = 28.7 bits (61), Expect = 5.1
 Identities = 15/26 (57%), Positives = 17/26 (65%)
 Frame = +1

Query: 493 GKPY*CKGPIDTKSRMRVGIKAPGII 570
           G P   KGP    +R RVG+KAPGII
Sbjct: 51  GNPIDGKGPTGG-TRARVGVKAPGII 75


>SB_7724| Best HMM Match : ATP-synt_ab_C (HMM E-Value=0)
          Length = 448

 Score = 38.3 bits (85), Expect = 0.006
 Identities = 17/46 (36%), Positives = 28/46 (60%)
 Frame = +2

Query: 377 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDAR 514
           + + G + LI+ G     TG  + +PVG + LGR+++ +G PID R
Sbjct: 124 IAMDGTEGLIR-GQKCVDTGGPITIPVGPETLGRIINVIGEPIDER 168


>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2937

 Score = 31.1 bits (67), Expect = 0.95
 Identities = 18/56 (32%), Positives = 24/56 (42%)
 Frame = +2

Query: 167 PQSCRDLHHPRREDPWSRAQG*SRRDWSCLSIGDGIARVYGLKNIQAEEMVEFSSG 334
           P  C    HPRRE  W+  +G  R+ WS LS    +      K  +    V+  SG
Sbjct: 680 PLYCLSTGHPRRE-AWTVCRGEGRQAWSILSSSSAVYENQNYKVFRLSLPVDGKSG 734


>SB_36848| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 608

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 588 AQKSRGNDTWRLNTDPHTGF 529
           + K+RGN  WR+ TD H G+
Sbjct: 3   SSKARGNSRWRMATDVHLGY 22


>SB_58527| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1659

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 14/37 (37%), Positives = 22/37 (59%)
 Frame = -3

Query: 469  DLLSDGNVYDSTSTLDNISFFDKLVITKYYHTHIVRF 359
            D LSDG+    ++T  N  F D+++   + HT+I RF
Sbjct: 1175 DALSDGS---KSNTSGNYGFMDQIMALSWIHTNIARF 1208


>SB_24092| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 17/65 (26%), Positives = 29/65 (44%)
 Frame = +2

Query: 320 EFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGN 499
           ++   +K +   ++P   G+VV G D  + E D+ K    I+ V        RV  + GN
Sbjct: 36  DYEGQIKKLMQYIDPSLDGIVVAGGDGTLLEADVSKIPIGIIPVGTNNTFFNRVFGS-GN 94

Query: 500 PIDAR 514
              +R
Sbjct: 95  ASQSR 99


>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3297

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 606 GIKAVDSLVPIGRGQRELIICDRQTGKNALGY 701
           G K+ + L   G+G+RE++   +Q G+  LG+
Sbjct: 99  GYKSGEGLGKYGQGRREILEASKQKGRRGLGF 130


>SB_7983| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 836

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 12/29 (41%), Positives = 14/29 (48%)
 Frame = -2

Query: 332 LRRTPPSPQPGCSSSHKHERYHHQCSDTT 246
           L R P SP    S  H H  YH+  + TT
Sbjct: 701 LIRAPSSPSTSSSQLHHHHPYHYHSAITT 729



 Score = 27.9 bits (59), Expect = 8.9
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = -2

Query: 326 RTPPSPQPGCSSSHKHERYHHQCSDTT 246
           R P SP    S  H H  +HH  + TT
Sbjct: 605 RAPSSPSISLSQRHHHHPHHHHSAITT 631


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,543,270
Number of Sequences: 59808
Number of extensions: 523040
Number of successful extensions: 1609
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1361
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1606
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1937927537
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)