Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30558
(726 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical ... 159 1e-39
AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical ... 159 1e-39
AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical ... 95 3e-20
AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical ... 88 7e-18
U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase su... 39 0.004
U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpa... 37 0.017
AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical ... 34 0.090
Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical pr... 31 1.1
Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical p... 31 1.1
U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linke... 28 7.8
U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linke... 28 7.8
U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linke... 28 7.8
AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-lin... 28 7.8
AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-lin... 28 7.8
AF078157-2|AAN84818.1| 176|Caenorhabditis elegans Hypothetical ... 28 7.8
AF078157-1|AAG24071.1| 235|Caenorhabditis elegans Hypothetical ... 28 7.8
AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-lin... 28 7.8
>AL023815-4|CAF31480.1| 511|Caenorhabditis elegans Hypothetical
protein H28O16.1d protein.
Length = 511
Score = 159 bits (387), Expect = 1e-39
Identities = 75/87 (86%), Positives = 83/87 (95%)
Frame = +2
Query: 254 LSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRT 433
LSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+I+EGDIVKRT
Sbjct: 33 LSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKVIREGDIVKRT 92
Query: 434 GAIVDVPVGEQILGRVVDALGNPIDAR 514
GAIVDVPVG+ +LGRVVDALGNPID +
Sbjct: 93 GAIVDVPVGDGLLGRVVDALGNPIDGK 119
Score = 68.5 bits (160), Expect = 5e-12
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = +3
Query: 573 PVISVR*PMQTGIKAVDSLVPIGRGQRELIICDRQTGKNAL 695
P +SVR PM TG+KAVDSLVPIGRGQRELII DRQTGK A+
Sbjct: 139 PRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAI 179
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 177 AEISTILEERILGAAPKADLEETGRV 254
+E+S ILEERILG +LEETG+V
Sbjct: 7 SEVSKILEERILGTETGINLEETGKV 32
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 493 GKPY*CKGPIDTKSRMRVGIKAPGII 570
G P KGPI R RV +KAPGII
Sbjct: 113 GNPIDGKGPIANARRSRVEVKAPGII 138
>AL023815-1|CAA19429.1| 538|Caenorhabditis elegans Hypothetical
protein H28O16.1a protein.
Length = 538
Score = 159 bits (387), Expect = 1e-39
Identities = 75/87 (86%), Positives = 83/87 (95%)
Frame = +2
Query: 254 LSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRT 433
LSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+I+EGDIVKRT
Sbjct: 60 LSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKVIREGDIVKRT 119
Query: 434 GAIVDVPVGEQILGRVVDALGNPIDAR 514
GAIVDVPVG+ +LGRVVDALGNPID +
Sbjct: 120 GAIVDVPVGDGLLGRVVDALGNPIDGK 146
Score = 68.5 bits (160), Expect = 5e-12
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = +3
Query: 573 PVISVR*PMQTGIKAVDSLVPIGRGQRELIICDRQTGKNAL 695
P +SVR PM TG+KAVDSLVPIGRGQRELII DRQTGK A+
Sbjct: 166 PRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAI 206
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 177 AEISTILEERILGAAPKADLEETGRV 254
+E+S ILEERILG +LEETG+V
Sbjct: 34 SEVSKILEERILGTETGINLEETGKV 59
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 493 GKPY*CKGPIDTKSRMRVGIKAPGII 570
G P KGPI R RV +KAPGII
Sbjct: 140 GNPIDGKGPIANARRSRVEVKAPGII 165
>AL023815-2|CAD92383.1| 146|Caenorhabditis elegans Hypothetical
protein H28O16.1b protein.
Length = 146
Score = 95.5 bits (227), Expect = 3e-20
Identities = 44/50 (88%), Positives = 48/50 (96%)
Frame = +2
Query: 254 LSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKL 403
LSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVVFGNDK+
Sbjct: 60 LSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVFGNDKI 109
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 177 AEISTILEERILGAAPKADLEETGRV 254
+E+S ILEERILG +LEETG+V
Sbjct: 34 SEVSKILEERILGTETGINLEETGKV 59
>AL023815-3|CAD92384.1| 503|Caenorhabditis elegans Hypothetical
protein H28O16.1c protein.
Length = 503
Score = 87.8 bits (208), Expect = 7e-18
Identities = 41/47 (87%), Positives = 44/47 (93%)
Frame = +2
Query: 254 LSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGN 394
LSIGDGIARVYGLKNIQAEEMVEF SG+KGMA+NL+ DNVGVVV GN
Sbjct: 60 LSIGDGIARVYGLKNIQAEEMVEFDSGIKGMAMNLDVDNVGVVVLGN 106
Score = 68.5 bits (160), Expect = 5e-12
Identities = 33/41 (80%), Positives = 36/41 (87%)
Frame = +3
Query: 573 PVISVR*PMQTGIKAVDSLVPIGRGQRELIICDRQTGKNAL 695
P +SVR PM TG+KAVDSLVPIGRGQRELII DRQTGK A+
Sbjct: 131 PRLSVREPMVTGVKAVDSLVPIGRGQRELIIGDRQTGKTAI 171
Score = 34.7 bits (76), Expect = 0.068
Identities = 16/26 (61%), Positives = 20/26 (76%)
Frame = +3
Query: 177 AEISTILEERILGAAPKADLEETGRV 254
+E+S ILEERILG +LEETG+V
Sbjct: 34 SEVSKILEERILGTETGINLEETGKV 59
Score = 31.1 bits (67), Expect = 0.84
Identities = 15/26 (57%), Positives = 16/26 (61%)
Frame = +1
Query: 493 GKPY*CKGPIDTKSRMRVGIKAPGII 570
G P KGPI R RV +KAPGII
Sbjct: 105 GNPIDGKGPIANARRSRVEVKAPGII 130
>U10402-2|AAA19068.2| 538|Caenorhabditis elegans Atp synthase
subunit protein 2 protein.
Length = 538
Score = 38.7 bits (86), Expect = 0.004
Identities = 17/46 (36%), Positives = 29/46 (63%)
Frame = +2
Query: 377 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDAR 514
+ + G + L++ G V TG + +PVG + LGR+++ +G PID R
Sbjct: 120 IAMDGTEGLVR-GQPVADTGDPIKIPVGPETLGRIMNVIGEPIDER 164
>U41015-2|AAA82311.1| 491|Caenorhabditis elegans Vacuolar h atpase
protein 12 protein.
Length = 491
Score = 36.7 bits (81), Expect = 0.017
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +2
Query: 341 GMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPID 508
G L + + V VF G + + I + TG I+ PV E +LGR+ + G PID
Sbjct: 66 GQVLEISKNKAVVQVFEGTSGIDAKNTICEFTGDILRTPVSEDMLGRIFNGSGKPID 122
>AL033512-1|CAA22076.1| 606|Caenorhabditis elegans Hypothetical
protein Y49A3A.2 protein.
Length = 606
Score = 34.3 bits (75), Expect = 0.090
Identities = 18/57 (31%), Positives = 28/57 (49%)
Frame = +2
Query: 335 LKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPI 505
L G + LE D + V+ + GD V RTG + V +G I+G + D + P+
Sbjct: 39 LVGEIIRLEGDYATIQVYEETSGVTIGDPVLRTGKPLSVELGPGIMGSIFDGIQRPL 95
>Z92973-7|CAB07494.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 281 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 457
+ GL +Q+ + E G+K + +L + +DK LIK G I+ + I VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690
Query: 458 GEQILGR-VVDAL 493
++G+ VV AL
Sbjct: 691 DTSLIGKSVVPAL 703
>Z81481-10|CAB03951.1| 1213|Caenorhabditis elegans Hypothetical
protein C38D9.5 protein.
Length = 1213
Score = 30.7 bits (66), Expect = 1.1
Identities = 22/73 (30%), Positives = 37/73 (50%), Gaps = 2/73 (2%)
Frame = +2
Query: 281 VYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDK-LIKEGDIVKRTGAIVDVPV 457
+ GL +Q+ + E G+K + +L + +DK LIK G I+ + I VP+
Sbjct: 631 IAGLPEMQSSWIQENRDGMKKLLDDLTKLDKYAKDHSSDKDLIKYGSILSKASEITGVPI 690
Query: 458 GEQILGR-VVDAL 493
++G+ VV AL
Sbjct: 691 DTSLIGKSVVPAL 703
>U23529-9|AAL32210.1| 713|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform b protein.
Length = 713
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 250 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 74
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>U23529-8|AAL32209.1| 682|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform a protein.
Length = 682
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 250 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 74
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>U23529-7|AAL32211.1| 622|Caenorhabditis elegans G-protein-linked
acetylcholinereceptor protein 1, isoform c protein.
Length = 622
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 250 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 74
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117301-1|AAF26202.1| 622|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1c protein.
Length = 622
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 250 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 74
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
>AF117300-1|AAF26201.1| 713|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1a protein.
Length = 713
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 250 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 74
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 453 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 512
>AF078157-2|AAN84818.1| 176|Caenorhabditis elegans Hypothetical
protein F25E5.8b protein.
Length = 176
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 308 QPGCSSSHKHERYHHQCSDTTSL-F*ISLGRGSKDPLFEDGGDLGS 174
+ G S SHK E +HH+ SL F G+ P+ E+ GD S
Sbjct: 37 EEGTSGSHKPEEHHHKEHHGHSLYFGKHSGKKHLPPVVENDGDTHS 82
>AF078157-1|AAG24071.1| 235|Caenorhabditis elegans Hypothetical
protein F25E5.8a protein.
Length = 235
Score = 27.9 bits (59), Expect = 7.8
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 308 QPGCSSSHKHERYHHQCSDTTSL-F*ISLGRGSKDPLFEDGGDLGS 174
+ G S SHK E +HH+ SL F G+ P+ E+ GD S
Sbjct: 37 EEGTSGSHKPEEHHHKEHHGHSLYFGKHSGKKHLPPVVENDGDTHS 82
>AF075245-1|AAD13747.1| 682|Caenorhabditis elegans G protein-linked
acetylcholinereceptor GAR-1b protein.
Length = 682
Score = 27.9 bits (59), Expect = 7.8
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
Frame = -3
Query: 250 RPVSSRSALGAAPR-ILSSRMVEISAALWVVETCSLRDXXXXXXXXTFDTWVAALGKRLA 74
RP SSR + + PR I + E +AA + E+ D D WV ++ KR+A
Sbjct: 422 RPRSSRRSEHSTPRQIAKVKQAEGTAAQLIEESVPDDDQTETIEVKRTDRWVVSMKKRIA 481
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,947,500
Number of Sequences: 27780
Number of extensions: 372703
Number of successful extensions: 1160
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1084
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1159
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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