Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30558
         (726 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.7  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.9  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      22   5.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          22   6.8  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   6.8  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           21   9.0  
AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase pro...    21   9.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.8 bits (49), Expect = 1.7
 Identities = 11/22 (50%), Positives = 16/22 (72%)
 Frame = -1

Query: 579 SRGNDTWRLNTDPHTGFRVDWS 514
           SR   T +L+TDP+T F+V+ S
Sbjct: 675 SRIKTTEKLSTDPNTHFQVNQS 696



 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 484 YYTPKDLLSDGNVYDSTSTLDNISFFDK 401
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 346 FYHPEDLPFIKDIYETVIKLEGASFRSK 373


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -2

Query: 320 PPSPQPGCSSSHKHERYHHQCSDTT 246
           PP+P+   S+S KHE  +   S TT
Sbjct: 213 PPAPRLTNSNSIKHESDNSDYSHTT 237


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.2 bits (45), Expect = 5.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -3

Query: 481 YTPKDLLSDGNVYDSTSTLDNISFF 407
           YTP+ L   GNV + +S   N  F+
Sbjct: 356 YTPEGLNMLGNVIEGSSDSINTKFY 380


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -3

Query: 481 YTPKDLLSDGNVYDSTSTLDNISFF 407
           YTP+ L   GNV +  S   N  F+
Sbjct: 356 YTPEGLNMLGNVIEGNSDSINTKFY 380


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 9/28 (32%), Positives = 16/28 (57%)
 Frame = -3

Query: 484 YYTPKDLLSDGNVYDSTSTLDNISFFDK 401
           +Y P+DL    ++Y++   L+  SF  K
Sbjct: 52  FYHPEDLPFIKDIYETVIKLEGASFRSK 79


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 5/7 (71%), Positives = 5/7 (71%)
 Frame = +1

Query: 121 YPQWPWH 141
           YP W WH
Sbjct: 231 YPNWEWH 237


>AB253416-1|BAE86927.1|  580|Apis mellifera alpha-glucosidase
           protein.
          Length = 580

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = +2

Query: 2   WLSVCHNYKFVKNVADLRSY 61
           WL V  NYK +   A  R Y
Sbjct: 443 WLPVNENYKSLNLAAQKREY 462


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,982
Number of Sequences: 438
Number of extensions: 4739
Number of successful extensions: 15
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)