Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30558
(726 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial... 132 3e-31
At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondria... 42 6e-04
At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,... 42 6e-04
At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondria... 42 6e-04
At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putati... 34 0.083
At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putati... 34 0.083
At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATP... 34 0.083
At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putati... 34 0.083
At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putati... 34 0.083
At5g49430.1 68418.m06116 transducin family protein / WD-40 repea... 31 0.78
At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1, plast... 29 2.4
At1g16270.1 68414.m01948 protein kinase family protein contains ... 29 3.1
At2g47410.1 68415.m05917 transducin family protein / WD-40 repea... 29 4.1
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 28 7.2
At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative 28 7.2
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 28 7.2
At5g48810.1 68418.m06039 cytochrome b5 identical to cytochrome b... 27 9.6
At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger) fa... 27 9.6
>At2g07698.1 68415.m00949 ATP synthase alpha chain, mitochondrial,
putative very strong similarity to SP|P23413 ATP
synthase alpha chain, mitochondrial (EC 3.6.3.14)
{Brassica campestris}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF00306: ATP synthase ab C terminal, PF02874:
ATP synthase alpha/beta family beta-barrel domain
Length = 777
Score = 132 bits (318), Expect = 3e-31
Identities = 61/87 (70%), Positives = 75/87 (86%)
Frame = +2
Query: 254 LSIGDGIARVYGLKNIQAEEMVEFSSGLKGMALNLEPDNVGVVVFGNDKLIKEGDIVKRT 433
+S+GDGIA+VYGL IQA EMV F++G+KGMALNLE +NVG+VVFG D IKEGD+VKRT
Sbjct: 304 VSVGDGIAQVYGLNEIQAGEMVLFANGVKGMALNLENENVGIVVFGGDTAIKEGDLVKRT 363
Query: 434 GAIVDVPVGEQILGRVVDALGNPIDAR 514
G+IVDVP G+ +LGRVVDA+G PID +
Sbjct: 364 GSIVDVPAGKAMLGRVVDAMGVPIDGK 390
Score = 64.1 bits (149), Expect = 9e-11
Identities = 30/38 (78%), Positives = 33/38 (86%)
Frame = +3
Query: 582 SVR*PMQTGIKAVDSLVPIGRGQRELIICDRQTGKNAL 695
SV PMQTG+KAVDSLVPIGRGQREL+I DRQTGK +
Sbjct: 413 SVHEPMQTGLKAVDSLVPIGRGQRELLIGDRQTGKTTI 450
>At5g08690.1 68418.m01034 ATP synthase beta chain 2, mitochondrial
identical to SP|P83484 ATP synthase beta chain 2,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452187|dbj|AK118582.1|
Length = 556
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +2
Query: 377 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDARDQ 520
+ + G + L++ G V TGA + VPVG LGR+++ LG PID R +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGE 182
>At5g08680.1 68418.m01033 ATP synthase beta chain, mitochondrial,
putative strong similarity to SP|P83483 ATP synthase
beta chain 1, mitochondrial precursor (EC 3.6.3.14)
{Arabidopsis thaliana}, SP|P17614 ATP synthase beta
chain, mitochondrial precursor (EC 3.6.3.14) {Nicotiana
plumbaginifolia}; contains Pfam profiles PF00006: ATP
synthase alpha/beta family nucleotide-binding domain,
PF00306: ATP synthase ab C terminal, PF02874: ATP
synthase alpha/beta family beta-barrel domain
Length = 559
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +2
Query: 377 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDARDQ 520
+ + G + L++ G V TGA + VPVG LGR+++ LG PID R +
Sbjct: 139 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGE 185
>At5g08670.1 68418.m01032 ATP synthase beta chain 1, mitochondrial
identical to SP|P83483 ATP synthase beta chain 1,
mitochondrial precursor (EC 3.6.3.14) {Arabidopsis
thaliana}; strong similarity to SP|P17614 ATP synthase
beta chain, mitochondrial precursor (EC 3.6.3.14)
{Nicotiana plumbaginifolia}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain; supporting cDNA
gi|26452102|dbj|AK118538.1|
Length = 556
Score = 41.5 bits (93), Expect = 6e-04
Identities = 20/48 (41%), Positives = 30/48 (62%)
Frame = +2
Query: 377 VVVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPIDARDQ 520
+ + G + L++ G V TGA + VPVG LGR+++ LG PID R +
Sbjct: 136 IAMDGTEGLVR-GRKVLNTGAPITVPVGRATLGRIMNVLGEPIDERGE 182
>At4g38510.2 68417.m05447 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 34.3 bits (75), Expect = 0.083
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 338 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPID 508
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 56 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPID 113
>At4g38510.1 68417.m05446 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
very strong similarity to SP|P11574 Vacuolar ATP
synthase subunit B (EC 3.6.3.14) (V-ATPase B subunit)
(Vacuolar proton pump B subunit) (V-ATPase 57 kDa
subunit) {Arabidopsis thaliana}; contains Pfam profiles
PF00006: ATP synthase alpha/beta family
nucleotide-binding domain, PF00306: ATP synthase ab C
terminal, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 487
Score = 34.3 bits (75), Expect = 0.083
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 338 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPID 508
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 56 RGQVLEVDGEKAVVQVFEGTSGIDNKYTTVQFTGEVLKTPVSLDMLGRIFNGSGKPID 113
>At1g76030.1 68414.m08827 vacuolar ATP synthase subunit B / V-ATPase
B subunit / vacuolar proton pump B subunit / V-ATPase 57
kDa subunit identical to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}
Length = 486
Score = 34.3 bits (75), Expect = 0.083
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 338 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPID 508
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPID 112
>At1g20260.2 68414.m02530 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 485
Score = 34.3 bits (75), Expect = 0.083
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 338 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPID 508
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPID 112
>At1g20260.1 68414.m02529 vacuolar ATP synthase subunit B, putative
/ V-ATPase B subunit, putative / vacuolar proton pump B
subunit, putative / V-ATPase 57 kDa subunit, putative
strong similarity to SP|P11574 Vacuolar ATP synthase
subunit B (EC 3.6.3.14) (V-ATPase B subunit) (Vacuolar
proton pump B subunit) (V-ATPase 57 kDa subunit)
{Arabidopsis thaliana}; contains Pfam profiles PF00006:
ATP synthase alpha/beta family nucleotide-binding
domain, PF02874: ATP synthase alpha/beta family
beta-barrel domain
Length = 330
Score = 34.3 bits (75), Expect = 0.083
Identities = 18/58 (31%), Positives = 30/58 (51%), Gaps = 1/58 (1%)
Frame = +2
Query: 338 KGMALNLEPDNVGVVVF-GNDKLIKEGDIVKRTGAIVDVPVGEQILGRVVDALGNPID 508
+G L ++ + V VF G + + V+ TG ++ PV +LGR+ + G PID
Sbjct: 55 RGQVLEVDGEKAVVQVFEGTSGIDNKFTTVQFTGEVLKTPVSLDMLGRIFNGSGKPID 112
>At5g49430.1 68418.m06116 transducin family protein / WD-40 repeat
family protein similar to WD-repeat protein 9
(SP:Q9NSI6) {Homo sapiens}; contains Pfam PF00400: WD
domain, G-beta repeat (4 copies)
Length = 1677
Score = 31.1 bits (67), Expect = 0.78
Identities = 15/51 (29%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Frame = +1
Query: 79 GACLMLLPRCQRWRYPQWPWHLANYMSQPPTKLPRSPP-SSKRGSLEPRPR 228
G+ ++ +PR +R W A ++ PP +P PP R + P PR
Sbjct: 495 GSAIIWIPRLRRSHGKSCRWTRAYHLKVPPPPMPPQPPRGGPRQRILPTPR 545
>At3g16950.1 68416.m02166 dihydrolipoamide dehydrogenase 1,
plastidic / lipoamide dehydrogenase 1 (PTLPD1) identical
to plastidic lipoamide dehydrogenase from Arabidopsis
thaliana [gi:7159282]
Length = 570
Score = 29.5 bits (63), Expect = 2.4
Identities = 13/35 (37%), Positives = 21/35 (60%)
Frame = +2
Query: 380 VVFGNDKLIKEGDIVKRTGAIVDVPVGEQILGRVV 484
V +G D +I DI+ TG++ VP G ++ G+ V
Sbjct: 207 VKYGKDNIITAKDIIIATGSVPFVPKGIEVDGKTV 241
>At1g16270.1 68414.m01948 protein kinase family protein contains
PF|00069 Eukaryotic protein kinase domain. ESTs
gb|H37741, gb|T43005 and gb|AI100340 come from this gene
Length = 1147
Score = 29.1 bits (62), Expect = 3.1
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 397 VITKYYHTHIVRFQVKGHSLEA 332
V+ YY TH+V++Q+ G L+A
Sbjct: 209 VLEIYYRTHVVKYQLPGEDLDA 230
>At2g47410.1 68415.m05917 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400);
similar to WDR protein, form B (GI:14970593) [Mus
musculus]
Length = 1589
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Frame = +1
Query: 79 GACLMLLPRCQRWRYPQWPWHLANYMSQPPTKLPRSPP-SSKRGSLEPRPR 228
G+ ++ PR +++ W ++ PP LP PP R P PR
Sbjct: 548 GSAIIWTPRSRKFHGKSGRWMKGYHLKVPPPPLPPQPPRGGPRQRFLPTPR 598
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 142 LANYMSQPPTKLPRSPPSSKRGSLEPRPRLI*KR 243
L +YM P T+L RGSLE +P+ I K+
Sbjct: 1168 LDSYMEGPSTRLRVRHQKPSRGSLETKPKKIGKK 1201
>At2g21840.1 68415.m02595 CHP-rich zinc finger protein, putative
Length = 746
Score = 27.9 bits (59), Expect = 7.2
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 472 KDLLSDGNVYDSTSTLDNISFFDKLVITKYYHTHIVR 362
KDL S + L+ I F D+L++ + H H+++
Sbjct: 363 KDLYSCSKGNTKSQHLETIEFEDRLLVNSFSHIHVMK 399
>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
non-consensus splice site at the intron:exon boundary
(AT:exon)
Length = 247
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
Frame = -2
Query: 380 PHPHCQVPS*GPFP*GLRRTPPSPQPGCSS---SHKHERYHH 264
P P P P P L PP+P P + HKH+R+HH
Sbjct: 148 PAPVSPPPVQAPSPISL---PPAPAPAPTKHKRKHKHKRHHH 186
>At5g48810.1 68418.m06039 cytochrome b5 identical to cytochrome b5
[Arabidopsis thaliana] GI:4240122; strong similarity to
Cytochrome B5 SP:P49098 from [Nicotiana tabacum]
Length = 140
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
Frame = -3
Query: 508 INRVSQSVYYTPKD--LLSDGNVYDSTSTLDNISFFDKLVITKYYHTHIVRFQVKGHSLE 335
++ VSQ + + KD ++ DG VYD T LD+ D++++T F+ GHS
Sbjct: 10 LSEVSQ--HSSAKDCWIVIDGKVYDVTKFLDDHPGGDEVILTSTGKDATDDFEDVGHSST 67
Query: 334 A 332
A
Sbjct: 68 A 68
>At3g10810.1 68416.m01301 zinc finger (C3HC4-type RING finger)
family protein contains Pfam profile: PF00097 Zinc
finger, C3HC4 type (RING finger)
Length = 496
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/18 (50%), Positives = 10/18 (55%)
Frame = -2
Query: 317 PSPQPGCSSSHKHERYHH 264
PSP P S H H +HH
Sbjct: 321 PSPSPSPHSKHHHHHHHH 338
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,432,860
Number of Sequences: 28952
Number of extensions: 367389
Number of successful extensions: 1105
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 1009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1104
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1584903024
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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