Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30557
         (699 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    26   0.26 
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    24   1.4  
DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    23   1.8  
DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11 pro...    22   5.5  
AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory recept...    22   5.5  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     21   9.7  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    21   9.7  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           21   9.7  
AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant transcrip...    21   9.7  

>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 26.2 bits (55), Expect = 0.26
 Identities = 13/41 (31%), Positives = 17/41 (41%)
 Frame = +2

Query: 542 FIKAPTPPTPTCPHNFLSNHKTEEKTLRNMCWLRSLKKQPD 664
           F+K P  P      +F S H        N C+LR  K+  D
Sbjct: 198 FVKVPRTPDKPGKGSFWSLHPDSGNMFENGCYLRRQKRFKD 238


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%), Gaps = 2/27 (7%)
 Frame = +1

Query: 109 MRAFVV--LACVAMAYGRPEPPVGYSY 183
           MR FV+  +ACV++A  RPE      Y
Sbjct: 1   MRFFVIFFVACVSVALARPEDQYTIKY 27


>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = -3

Query: 586 IMGASRSGRSWGLDEDDLV 530
           I+G    GR+W +DED  +
Sbjct: 286 ILGIPAYGRAWKMDEDSSI 304


>DQ659251-1|ABG47449.1|  366|Tribolium castaneum chitinase 11
           protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 590 LSNHKTEEKTLRNMCWLRS 646
           +S H+TE KT + +C+  S
Sbjct: 14  ISTHQTEAKTDKILCFFAS 32


>AM292371-1|CAL23183.2|  350|Tribolium castaneum gustatory receptor
           candidate 50 protein.
          Length = 350

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 37  LIGY*INYHRVS 72
           L+GY INY R+S
Sbjct: 112 LLGYSINYRRIS 123


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 532 QDHLHQGPNSSHSYLPP 582
           Q H H GP   H   PP
Sbjct: 88  QLHSHHGPPIHHQIRPP 104


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 532 QDHLHQGPNSSHSYLPP 582
           Q H H GP   H   PP
Sbjct: 88  QLHSHHGPPIHHQIRPP 104


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 532 QDHLHQGPNSSHSYLPP 582
           Q H H GP   H   PP
Sbjct: 88  QLHSHHGPPIHHQIRPP 104


>AF243042-1|AAF68438.1|  126|Tribolium castaneum mutant
           transcription factor TcDfd1 protein.
          Length = 126

 Score = 21.0 bits (42), Expect = 9.7
 Identities = 8/17 (47%), Positives = 8/17 (47%)
 Frame = +1

Query: 532 QDHLHQGPNSSHSYLPP 582
           Q H H GP   H   PP
Sbjct: 88  QLHSHHGPPIHHQIRPP 104


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 142,288
Number of Sequences: 336
Number of extensions: 2747
Number of successful extensions: 12
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18426585
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)