Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30557
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398 31 0.88
08_02_0229 - 14540302-14540736 30 2.0
03_06_0316 + 33091194-33091370,33091451-33092155 29 2.7
12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012 29 3.5
03_05_0357 - 23424234-23424567,23424796-23424923,23425024-234252... 29 3.5
04_04_0063 - 22441549-22442961 28 6.2
05_07_0289 + 29004842-29005213,29005318-29005605,29005707-290058... 28 8.2
02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386 28 8.2
02_02_0471 - 10714440-10714846,10714947-10715034,10715427-107155... 28 8.2
01_06_1227 + 35531840-35532516,35532665-35532836,35533158-355333... 28 8.2
>06_03_1365 + 29598130-29598523,29599016-29599078,29599292-29599398
Length = 187
Score = 31.1 bits (67), Expect = 0.88
Identities = 21/48 (43%), Positives = 26/48 (54%)
Frame = -2
Query: 422 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 279
V+T SA S +S A AAAA G T + + SA+ GNAAS A
Sbjct: 109 VTTDASACAKSASSSATAAAAAAGAGTAGSTAAS--SASTGNAASTAA 154
>08_02_0229 - 14540302-14540736
Length = 144
Score = 29.9 bits (64), Expect = 2.0
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -1
Query: 366 CRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAADRGR 217
CRR+G R Q++ RR+G C G G +N++V AAD GR
Sbjct: 71 CRRRGGTSGGLRGKQRAGRRRGGGCDAGGGDGTAG-RRANAAVGAADDGR 119
>03_06_0316 + 33091194-33091370,33091451-33092155
Length = 293
Score = 29.5 bits (63), Expect = 2.7
Identities = 16/48 (33%), Positives = 26/48 (54%)
Frame = -2
Query: 422 VSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 279
++T ++ATE + +E AAA + +T + + AK AA RKA
Sbjct: 1 MATDVAATEPEVAAEEAAAAAPETTATAGDSKPAKEAKAKKAAAPRKA 48
>12_02_0827 + 23492583-23492633,23493018-23493566,23493722-23494012
Length = 296
Score = 29.1 bits (62), Expect = 3.5
Identities = 19/53 (35%), Positives = 26/53 (49%)
Frame = -2
Query: 437 KRSTRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 279
KRST+ S+ S+ + A AAA STT T + S+A AA+ A
Sbjct: 148 KRSTKKSSSSSSRQGGGAGNA-AAAATSSSSTTSTSTTATTSSAAAPAAAAAA 199
>03_05_0357 -
23424234-23424567,23424796-23424923,23425024-23425205,
23425255-23425504
Length = 297
Score = 29.1 bits (62), Expect = 3.5
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 454 MFTYLPQNQLSKDFLVSLRGSTPETLQDHLHQGPNSSHSY 573
+F L K++L + +T ETLQD P++ H Y
Sbjct: 68 IFHALVNKLREKEYLTVAKNATNETLQDWFQHSPDTIHRY 107
>04_04_0063 - 22441549-22442961
Length = 470
Score = 28.3 bits (60), Expect = 6.2
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 419 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKG--NAASRKAT*GSRMTT 255
+T +AT S + A+TA+ A S+R VS+AKG AAS + T + T
Sbjct: 310 TTTTTATACSTPASARTASVADYGFDQHLPSVRLVSSAKGTPEAASHRWTAADKSRT 366
>05_07_0289 +
29004842-29005213,29005318-29005605,29005707-29005853,
29005939-29006175,29006261-29006524,29006609-29006725,
29006991-29007042,29007903-29008303,29008380-29008598,
29008692-29008925
Length = 776
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/67 (25%), Positives = 27/67 (40%)
Frame = -2
Query: 515 EPRRDTRKSLLNWFWGRYVNIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTE 336
EP+R R S FW R+ + TR + + I + A G + TE
Sbjct: 311 EPKRGFRISTYALFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREELAFELGRAPTE 370
Query: 335 TESIRRV 315
E +++V
Sbjct: 371 EEVMKKV 377
>02_05_0045 - 25393185-25394431,25394837-25395166,25395450-25396386
Length = 837
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 530 NVSGVEPRRDTRKSLLNWFWGRYVNIDVFLYKRSTR 423
N+S V PR+ S N F+ NIDV L++ TR
Sbjct: 121 NISWVSPRKGVTISQRNTFYIIGCNIDVTLFEYGTR 156
>02_02_0471 -
10714440-10714846,10714947-10715034,10715427-10715516,
10715614-10715727
Length = 232
Score = 27.9 bits (59), Expect = 8.2
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -2
Query: 425 RVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 279
+VST + A E I + TAAAA+ E E + + A G +A
Sbjct: 127 KVSTLLPADEEEIKPKEATAAAAEEEKKEEAAAAAAATDAAGEEKKEEA 175
>01_06_1227 +
35531840-35532516,35532665-35532836,35533158-35533357,
35533467-35533622,35536878-35537235,35537407-35537418
Length = 524
Score = 27.9 bits (59), Expect = 8.2
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Frame = +2
Query: 80 GSVSFRPSTKCALSWYSPVWL---WPM--AALNLQWDTATPLP 193
G + T L+W+ P+WL W M AA N+ AT +P
Sbjct: 410 GGIRCAKETMPLLNWHGPIWLGTDWDMFHAAANVSRTAATRVP 452
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,170,529
Number of Sequences: 37544
Number of extensions: 337661
Number of successful extensions: 1496
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1407
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1493
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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