Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30557
         (699 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.2  
SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.6  
SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)                   29   2.7  
SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.6  
SB_54391| Best HMM Match : MarR (HMM E-Value=0.95)                     29   4.8  
SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18)               29   4.8  
SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)                   28   6.3  
SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_17309| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.3  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.4  

>SB_52793| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 532

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 17/45 (37%), Positives = 26/45 (57%)
 Frame = +1

Query: 376 ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKDFLVSLR 510
           A +V  +   D++V  L  LL  NTSMF+   QN +SK  ++ L+
Sbjct: 266 ARKVFTNKTQDIKVSKLTRLLVANTSMFS---QNLVSKSAVIKLK 307


>SB_43849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 771

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 6/71 (8%)
 Frame = +1

Query: 1   LSHRNISKVGVVLIGY*INYHRV--SSKRISL----VSSKHKMRAFVVLACVAMAYGRPE 162
           +SH  +  + + +IGY  +YHRV   S  I L    +SS H++  F+ L       G P 
Sbjct: 637 VSHFLLLGIPLRIIGYPTSYHRVVFLSSGIPLPIIGLSSYHRVSHFLSLGIPLPIIGIPL 696

Query: 163 PPVGYSYSAPR 195
           P +GY  S  R
Sbjct: 697 PIIGYPTSYHR 707


>SB_8639| Best HMM Match : WD40 (HMM E-Value=1.9e-22)
          Length = 442

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
 Frame = -2

Query: 629 YYE-VSSLPFCGWIGNYGGK*EWEELGP**R*SCNV 525
           YYE V   P+C WI NY  K   + +G   +  CNV
Sbjct: 225 YYEIVEDAPYCYWISNYQAKQAQKGIGFMPKRGCNV 260


>SB_27033| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 960

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 19/76 (25%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
 Frame = -2

Query: 458 NIDVFLYKRSTRVSTRISATESSITSEAQTAAAAKGESTTETESI---RRVSAAKGNAAS 288
           N D+F  +++ + + R S T+S+I   +    +A    TT++++I   +   A++G    
Sbjct: 493 NKDIFRKQKTVQNTFRTSKTKSNIAELSMAVKSAARAKTTQSQNITKNKEEKASEGKGER 552

Query: 287 RKAT*GSRMTTIATVL 240
           +K T  SR +++ + L
Sbjct: 553 KKNT--SRPSSVTSSL 566


>SB_59261| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 5445

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
 Frame = +1

Query: 349  SPLAAAAV*ASEVMLDSVADMRVDTLVLLLYRNTSMFTYLPQNQLSKD----FLVSLRGS 516
            S L  A   A +V   S  D   D +V+L  + T   T +P   L  D    +L+++   
Sbjct: 3187 SNLTDALTKAKDVAFMSDRDSAPDVVVILTDKITENVT-VPAQALKDDGVKVYLIAIGEG 3245

Query: 517  TPETLQDHLHQGPNSSHSYLPP*F 588
              ETL  ++   P   H + PP F
Sbjct: 3246 RNETLLRNVPSEPEKDHLFTPPSF 3269


>SB_54391| Best HMM Match : MarR (HMM E-Value=0.95)
          Length = 837

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 355 LAAAAV*ASEVMLDSVADMRVDTLV-LLLYRNTSMFTYLPQNQLSKDFLVSLRGSTPETL 531
           L AA    S+++   V D     L  LLL   T++FT + Q+ +S+  L +L+ +T + L
Sbjct: 517 LIAATHDLSKIVASWVTDEGKQQLAKLLLQYYTTLFTNIKQDPMSESSLGALKTATDDVL 576

Query: 532 Q 534
           Q
Sbjct: 577 Q 577


>SB_49258| Best HMM Match : Herpes_UL6 (HMM E-Value=0.18)
          Length = 899

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
 Frame = +1

Query: 355 LAAAAV*ASEVMLDSVADMRVDTLV-LLLYRNTSMFTYLPQNQLSKDFLVSLRGSTPETL 531
           L AA    S+++   V D     L  LLL   T++FT + Q+ +S+  L +L+ +T + L
Sbjct: 542 LIAATHDLSKIVASWVTDEGKQQLAKLLLQYYTTLFTNIKQDPMSESSLGALKTATDDVL 601

Query: 532 Q 534
           Q
Sbjct: 602 Q 602


>SB_56900| Best HMM Match : I-set (HMM E-Value=8e-10)
          Length = 968

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 431 SSCTETHLCSRTSPRTS*AKTSSYPCVAPPQKHYKIIFIKAPTPPTPTCP 580
           S+ T TH   R  PR     T +Y    P   H +      P+  TPTCP
Sbjct: 449 STPTPTH---RVHPRLHAQYTLAYTPSTPTPTHAEYTHAYTPSTQTPTCP 495



 Score = 28.3 bits (60), Expect = 6.3
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +2

Query: 431 SSCTETHLCSRTSPRTS*AKTSSYPCVAPPQKHYKIIFIKAPTPPTPTCP 580
           S+ T TH   R  PR     T +Y    P   H +      P+  TPTCP
Sbjct: 632 STPTPTH---RVHPRLHAQYTLAYTPSTPTPTHAEYTHAYTPSTQTPTCP 678


>SB_10132| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 101

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
 Frame = +2

Query: 182 TPLPEVTQEA-SALPLSAADTELLLWWS---FWIPRWPFWRQHFP 304
           TPLP  T  + +  P    DT +  W +   +W P  P+W  + P
Sbjct: 29  TPLPYWTPHSLTRHPYPLLDTHIPYWTAHIPYWTPYLPYWTPYLP 73


>SB_17309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 438 VQKHIYVHVPPPEPVEQRLPRIPAWLHPRNIT 533
           V KH  +H P P P+  R   +  +L PR +T
Sbjct: 67  VDKHNPIHNPSPTPLTLRYQSLQTFLAPRPVT 98


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/63 (26%), Positives = 32/63 (50%)
 Frame = -2

Query: 431  STRVSTRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTI 252
            +T ++  ++A+ +S+ +   T AAA   +   T +   +  A   AA+  A+  S +T  
Sbjct: 1121 ATTIAAAVTASTASVVTTTATVAAATTTAEKATTTTAAMVKATTTAAAVTASTASVVTKT 1180

Query: 251  ATV 243
            ATV
Sbjct: 1181 ATV 1183


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,768,797
Number of Sequences: 59808
Number of extensions: 344162
Number of successful extensions: 1271
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1267
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1829596184
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)