Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30557
(699 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ249209-1|CAC80547.1| 981|Homo sapiens kainate receptor subuni... 33 0.74
Y10351-1|CAA71377.1| 711|Homo sapiens nuclear protein SDK3 prot... 33 0.98
U77718-1|AAB48304.1| 743|Homo sapiens pinin protein. 33 0.98
U59479-1|AAB03391.1| 99|Homo sapiens neutrophil protein protein. 33 0.98
BC062602-1|AAH62602.1| 717|Homo sapiens pinin, desmosome associ... 33 0.98
AF112222-1|AAF17209.1| 717|Homo sapiens nuclear protein SDK3 pr... 33 0.98
AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein. 32 1.7
Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein. 31 3.0
AK223612-1|BAD97332.1| 717|Homo sapiens pinin, desmosome associ... 31 3.0
BC150263-1|AAI50264.1| 1261|Homo sapiens cordon-bleu homolog (mo... 31 4.0
BC045771-1|AAH45771.1| 1146|Homo sapiens COBL protein protein. 31 4.0
BC029275-1|AAH29275.1| 899|Homo sapiens COBL protein protein. 31 4.0
AL713786-1|CAD28543.1| 803|Homo sapiens hypothetical protein pr... 31 4.0
AB014533-1|BAA31608.1| 1316|Homo sapiens KIAA0633 protein protein. 31 4.0
AF195139-1|AAG33941.1| 717|Homo sapiens pinin protein. 30 9.1
>AJ249209-1|CAC80547.1| 981|Homo sapiens kainate receptor subunit
KA2a protein.
Length = 981
Score = 33.5 bits (73), Expect = 0.74
Identities = 25/84 (29%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Frame = +2
Query: 455 CSRTSPRTS*AKTSSYPCVAPPQKHYKIIFIKAPTPPTPTCP----HNFLSNHKTEEKTL 622
CS PRT K S V P ++ F + T CP H S + + +
Sbjct: 849 CSALGPRTP-LKEPSMLLVKVPSTRVQVAFSR--TSLRQVCPFLLQHQLSSLYWIQATNV 905
Query: 623 RNMCWLRSLKKQPDIYYPNSSNPL 694
+ C SLK PD+ +P S PL
Sbjct: 906 QICCHFSSLKPSPDLTFPPSHRPL 929
>Y10351-1|CAA71377.1| 711|Homo sapiens nuclear protein SDK3
protein.
Length = 711
Score = 33.1 bits (72), Expect = 0.98
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
+R R +GR H+RDR H++SV R+ ++ G++ H S+ S+ D
Sbjct: 625 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 668
>U77718-1|AAB48304.1| 743|Homo sapiens pinin protein.
Length = 743
Score = 33.1 bits (72), Expect = 0.98
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
+R R +GR H+RDR H++SV R+ ++ G++ H S+ S+ D
Sbjct: 657 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 700
>U59479-1|AAB03391.1| 99|Homo sapiens neutrophil protein protein.
Length = 99
Score = 33.1 bits (72), Expect = 0.98
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
+R R +GR H+RDR H++SV R+ ++ G++ H S+ S+ D
Sbjct: 13 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 56
>BC062602-1|AAH62602.1| 717|Homo sapiens pinin, desmosome
associated protein protein.
Length = 717
Score = 33.1 bits (72), Expect = 0.98
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
+R R +GR H+RDR H++SV R+ ++ G++ H S+ S+ D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 674
>AF112222-1|AAF17209.1| 717|Homo sapiens nuclear protein SDK3
protein.
Length = 717
Score = 33.1 bits (72), Expect = 0.98
Identities = 17/49 (34%), Positives = 29/49 (59%)
Frame = -1
Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
+R R +GR H+RDR H++SV R+ ++ G++ H S+ S+ D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGSSRD 674
>AJ298318-1|CAC83675.1| 1349|Homo sapiens mucin 5 protein.
Length = 1349
Score = 32.3 bits (70), Expect = 1.7
Identities = 19/58 (32%), Positives = 28/58 (48%)
Frame = -2
Query: 419 STRISATESSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKAT*GSRMTTIAT 246
ST S T S+ ++ + +A STT T + SAA + S T S +TT +T
Sbjct: 413 STTSSPTTSTTSATTTSTTSAPTSSTTSTPQTSKTSAATSSTTSSSGTTPSPVTTTST 470
>Y09703-1|CAA70874.1| 586|Homo sapiens MEMA protein.
Length = 586
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1
Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
+R R +GR H+RDR H++SV R+ ++ G++ H S+ + D
Sbjct: 500 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGGSRD 543
>AK223612-1|BAD97332.1| 717|Homo sapiens pinin, desmosome
associated protein variant protein.
Length = 717
Score = 31.5 bits (68), Expect = 3.0
Identities = 16/49 (32%), Positives = 28/49 (57%)
Frame = -1
Query: 372 NRCRRQGRVHHRDRVHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAAD 226
+R R +GR H+RDR H++SV R+ ++ G++ H S+ + D
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK-----RRDTSGLERSHKSSKGGGSRD 674
>BC150263-1|AAI50264.1| 1261|Homo sapiens cordon-bleu homolog (mouse)
protein.
Length = 1261
Score = 31.1 bits (67), Expect = 4.0
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 494 SSYPCVAPPQKHYKIIFIKAPTPPTPTCPHNFLSNHKTEEKTLRNMCWLRSLKKQPD 664
+ +PCV PP H + + + AP PH LS R+ C+ Q D
Sbjct: 929 AQWPCVTPPNNHGEDLAVGAPPRGEVIGPHRKLSTQDRPAAIHRSSCFSLVQSSQRD 985
>BC045771-1|AAH45771.1| 1146|Homo sapiens COBL protein protein.
Length = 1146
Score = 31.1 bits (67), Expect = 4.0
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 494 SSYPCVAPPQKHYKIIFIKAPTPPTPTCPHNFLSNHKTEEKTLRNMCWLRSLKKQPD 664
+ +PCV PP H + + + AP PH LS R+ C+ Q D
Sbjct: 814 AQWPCVTPPNNHGEDLAVGAPPRGEVIGPHRKLSTQDRPAAIHRSSCFSLVQSSQRD 870
>BC029275-1|AAH29275.1| 899|Homo sapiens COBL protein protein.
Length = 899
Score = 31.1 bits (67), Expect = 4.0
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 494 SSYPCVAPPQKHYKIIFIKAPTPPTPTCPHNFLSNHKTEEKTLRNMCWLRSLKKQPD 664
+ +PCV PP H + + + AP PH LS R+ C+ Q D
Sbjct: 614 AQWPCVTPPNNHGEDLAVGAPPRGEVIGPHRKLSTQDRPAAIHRSSCFSLVQSSQRD 670
>AL713786-1|CAD28543.1| 803|Homo sapiens hypothetical protein
protein.
Length = 803
Score = 31.1 bits (67), Expect = 4.0
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 494 SSYPCVAPPQKHYKIIFIKAPTPPTPTCPHNFLSNHKTEEKTLRNMCWLRSLKKQPD 664
+ +PCV PP H + + + AP PH LS R+ C+ Q D
Sbjct: 471 AQWPCVTPPNNHGEDLAVGAPPRGEVIGPHRKLSTQDRPAAIHRSSCFSLVQSSQRD 527
>AB014533-1|BAA31608.1| 1316|Homo sapiens KIAA0633 protein protein.
Length = 1316
Score = 31.1 bits (67), Expect = 4.0
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +2
Query: 494 SSYPCVAPPQKHYKIIFIKAPTPPTPTCPHNFLSNHKTEEKTLRNMCWLRSLKKQPD 664
+ +PCV PP H + + + AP PH LS R+ C+ Q D
Sbjct: 984 AQWPCVTPPNNHGEDLAVGAPPRGEVIGPHRKLSTQDRPAAIHRSSCFSLVQSSQRD 1040
>AF195139-1|AAG33941.1| 717|Homo sapiens pinin protein.
Length = 717
Score = 29.9 bits (64), Expect = 9.1
Identities = 12/23 (52%), Positives = 18/23 (78%)
Frame = -1
Query: 372 NRCRRQGRVHHRDRVHQKSVRRQ 304
+R R +GR H+RDR H++SV R+
Sbjct: 631 SRSRSRGRGHNRDRKHRRSVDRK 653
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 91,721,737
Number of Sequences: 237096
Number of extensions: 1869705
Number of successful extensions: 5314
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 5009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5313
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8063224416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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