Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30557
         (699 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    25   0.69 
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        23   2.8  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          23   3.7  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    22   4.9  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    21   8.5  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   8.5  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    21   8.5  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 25.0 bits (52), Expect = 0.69
 Identities = 17/60 (28%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +2

Query: 455 CSRTSPRTS*AKTSSYPCVAPPQKHYKIIFI-KAPTPPTPTCPHNFLSNHKTEEKTLRNM 631
           CS+TS   S  +T S  C  P   H K+  I +  +   P+  ++  S    +E +LR +
Sbjct: 365 CSQTSVHYSNGQTHSQLCPTPRSTHLKVSGINRVGSTRRPSRRNSCESQMMGDEMSLREL 424


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 395 SSITSEAQTAAAAKGESTTETESIRRVSAAKGNAASRKA 279
           ++ +S A  AAAA   +T   +S R  ++  GN A   A
Sbjct: 125 TAASSAALAAAAAVDAATAGDKSCRYTASLAGNVAPASA 163


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +1

Query: 499 VSLRGSTPETLQDHLHQGPNSSHSYLPP 582
           +S  GS+P     H HQ P+ +HS   P
Sbjct: 622 ISQDGSSP-----HFHQSPSQNHSSAVP 644


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -1

Query: 648  RLLNQHILRSVFSSVLWLDRKLWGQ 574
            R L++HI  S+ S    L+R  W Q
Sbjct: 1328 RPLSEHIYSSIDSDYSTLERTAWRQ 1352


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 12/40 (30%), Positives = 17/40 (42%)
 Frame = -1

Query: 330 VHQKSVRRQGKCCLQKGHLGIQNDHHSNSSVSAADRGRAE 211
           V Q   R Q    +  GH    +  H NSS S+   G+ +
Sbjct: 789 VQQSQQRHQHAAQMIYGHQQSHHGLHINSSPSSVQSGQQQ 828


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +1

Query: 466 LPQNQLSKDFLVSLRGSTPETLQDHLHQGPNSSHSYLPP 582
           LP +   +D  VS      E     L   P  SHS  PP
Sbjct: 444 LPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSRCPP 482


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 13/39 (33%), Positives = 15/39 (38%)
 Frame = +1

Query: 466 LPQNQLSKDFLVSLRGSTPETLQDHLHQGPNSSHSYLPP 582
           LP +   +D  VS      E     L   P  SHS  PP
Sbjct: 444 LPLHTECEDLSVSGEAGIEEVKSPVLRSPPAFSHSRCPP 482


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 6/10 (60%), Positives = 9/10 (90%)
 Frame = +3

Query: 432 PLVQKHIYVH 461
           PL+QKH+ +H
Sbjct: 317 PLIQKHLKIH 326


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,883
Number of Sequences: 438
Number of extensions: 3409
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21439440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)