Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30556
         (664 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein ...   130   2e-31
SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0...   125   5e-30
SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    33   0.049
SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex s...    28   1.4  
SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   4.2  
SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr 2...    26   5.6  
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    25   7.4  
SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase Byr2...    25   9.7  
SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces ...    25   9.7  
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub...    25   9.7  

>SPAPJ698.02c |rps002|rpsa-2, rps0-2, rps0|40S ribosomal protein
           S0B|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 287

 Score =  130 bits (314), Expect = 2e-31
 Identities = 64/88 (72%), Positives = 71/88 (80%)
 Frame = +2

Query: 245 CVRLSSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQP 424
           CV +SSRP+G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL+IV DP  D Q 
Sbjct: 78  CV-ISSRPYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIIVTDPRADAQA 136

Query: 425 ITEASYVNIPVIALCNTDSPLRFVDIAI 508
           I EAS+VNIPVIALC+TDS L  VD+AI
Sbjct: 137 IKEASFVNIPVIALCDTDSILNHVDVAI 164



 Score = 94.3 bits (224), Expect = 1e-20
 Identities = 41/75 (54%), Positives = 56/75 (74%)
 Frame = +3

Query: 45  VLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVV 224
           VL   ++D+  +LAA +H+G++N+  +ME YV+KRR+DG H+INL +TWEKLVLAAR + 
Sbjct: 10  VLNATDDDIKNLLAADSHIGSKNLEVRMENYVWKRRSDGIHIINLGKTWEKLVLAARVIA 69

Query: 225 AIENPADVFVSHHGP 269
            IENPADV V    P
Sbjct: 70  TIENPADVCVISSRP 84


>SPBC685.06 |rps001|rps0-1, rpsa-1, rps0|40S ribosomal protein S0A
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 292

 Score =  125 bits (302), Expect = 5e-30
 Identities = 62/88 (70%), Positives = 70/88 (79%)
 Frame = +2

Query: 245 CVRLSSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQDHQP 424
           CV +S+R +G RAVLKFAAHTGAT IAGRFTPG FTN I   +REPRL++V DP  D Q 
Sbjct: 77  CV-VSTRTYGHRAVLKFAAHTGATAIAGRFTPGNFTNYITRTYREPRLIVVTDPRADAQA 135

Query: 425 ITEASYVNIPVIALCNTDSPLRFVDIAI 508
           I EAS+VNIPVIALC+TDS L  VDIAI
Sbjct: 136 IKEASFVNIPVIALCDTDSILNHVDIAI 163



 Score = 93.9 bits (223), Expect = 2e-20
 Identities = 39/74 (52%), Positives = 57/74 (77%)
 Frame = +3

Query: 33  GGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAA 212
           G  ++L   +ED+ ++LAA  H+G++N+  +M+ YV+KRR+DG H++NL +TWEKLVLAA
Sbjct: 5   GRPNILNATDEDIKQLLAANCHIGSKNLEVRMDNYVWKRRSDGVHILNLGKTWEKLVLAA 64

Query: 213 RAVVAIENPADVFV 254
           R +  IENPADV V
Sbjct: 65  RVIATIENPADVCV 78


>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 32.7 bits (71), Expect = 0.049
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 380 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIHA 514
           P L+++L+P ++     EA   ++P I + +TD+  R V   I A
Sbjct: 180 PDLMVILNPLENKSACLEAQKTHVPTIGIIDTDADPRMVTYPIPA 224


>SPBC3B9.07c |rpa43|rpa21|DNA-directed RNA polymerase I complex
           subunit Rpa43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 173

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = -3

Query: 284 QHADRRAVMRDEHISGVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHLEVNIFC 105
           +H D   + +   I+G++  YD+     +F   + +V +     + F  I + ++V +F 
Sbjct: 31  EHMDSMILSKLPRINGIVLAYDNI----RFLEKSAKVMY----DSPFSFIWVRVDVLVFS 82

Query: 104 PKMGGCSKHFGDIFLVEGEHV 42
           PK G C +  G I LV   H+
Sbjct: 83  PKKGDCLE--GKINLVSPSHI 101


>SPBC17A3.03c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 263

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = -1

Query: 553 HHIKPIEVGKTWCCMDSNVHKS*WGVCVAQSNHRNVDI*SFSNGLMV 413
           H +   E  K  CC++ N HK   G+ V  +++   D  +FSN  +V
Sbjct: 17  HSVNSEEQAKPVCCLELNAHKD--GIKVVDTSN---DASTFSNSPLV 58


>SPBC1198.08 |||dipeptidase Dug1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 474

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 16/56 (28%), Positives = 25/56 (44%)
 Frame = -1

Query: 430 SNGLMVLCRVQYNQETRFTECSLNLVSKSTWCETPRNRRSTGVRGKLQYSTLTEGP 263
           S GL  L R +   E  F +     +S + W  T +   + G+RG   ++   EGP
Sbjct: 169 SEGLEDLIRAE--AEKYFAKADCVCISDTYWLGTKKPVLTYGLRGVCYFNITVEGP 222


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 6/25 (24%), Positives = 17/25 (68%)
 Frame = -2

Query: 252 RTHQRGSRWLRQHEQPEQVFPRYDA 178
           R H++ + W ++HE+P+ +   +++
Sbjct: 571 RFHKKYTTWFQRHEEPKMITDEFES 595


>SPBC1D7.05 |byr2|ste8, SPBC2F12.01|MAP kinase kinase kinase
           Byr2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 659

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
 Frame = -3

Query: 176 VDHMGTISTSFVDIGLHLEVNIFCPKMGGCSKHF-GDIFLVEGEHV*SSRH 27
           VD+ G I  S   I   LE+N    K GG    F G  F +  E V  + H
Sbjct: 530 VDNKGKIKISDFGISKKLELNSTSTKTGGARPSFQGSSFWMAPEVVKQTMH 580


>SPAC6B12.02c |mus7||DNA repair protein Mus7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1888

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = +1

Query: 136  MSTNDVLMVPM*STCVVPGKNLFWLLVL 219
            M+ N V  + +  T   PG N FW L++
Sbjct: 920  MTLNPVFQIGLNGTTHSPGNNSFWPLII 947


>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 804

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 8/35 (22%), Positives = 17/35 (48%)
 Frame = -1

Query: 598 GEAHHEASTLHVPNNHHIKPIEVGKTWCCMDSNVH 494
           G   +EA+ + +    HI  ++  + WC M +  +
Sbjct: 494 GPKMYEANWMDLAQKGHIAKVQCAEVWCAMTTEFY 528


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,065,152
Number of Sequences: 5004
Number of extensions: 68914
Number of successful extensions: 158
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)