Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30556
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1272 - 25360180-25360286,25360454-25360658,25360748-253609... 127 7e-30
03_01_0582 - 4318837-4318967,4319219-4319399,4319504-4319701,431... 127 7e-30
08_01_0539 + 4679392-4681282,4682060-4682104,4682403-4683560,468... 30 1.9
06_01_0838 - 6360232-6360460,6360571-6360719,6360825-6360933,636... 30 1.9
01_06_0364 - 28749825-28750053,28750442-28750621,28751018-287511... 29 3.3
11_06_0458 + 23808402-23808469,23808800-23809684,23810011-238119... 29 4.4
07_03_0172 + 14697741-14697869,14697878-14697998,14698134-146982... 29 4.4
10_08_0262 + 16307003-16308416,16309501-16309595,16309954-163099... 28 5.8
01_06_0902 + 32853708-32853739,32854787-32855596,32856094-328561... 28 5.8
01_06_0575 - 30357556-30357582,30357698-30357944,30358039-303581... 28 7.6
>07_03_1272 -
25360180-25360286,25360454-25360658,25360748-25360945,
25361034-25361296,25361865-25362009
Length = 305
Score = 127 bits (307), Expect = 7e-30
Identities = 59/93 (63%), Positives = 72/93 (77%)
Frame = +2
Query: 236 PR*CVRLSSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 415
P+ + S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 416 HQPITEASYVNIPVIALCNTDSPLRFVDIAIHA 514
HQPI E++ NIP IA C+TDSP+R+VDI I A
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPA 167
Score = 97.9 bits (233), Expect = 6e-21
Identities = 44/74 (59%), Positives = 54/74 (72%)
Frame = +3
Query: 48 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 227
L+ E+D+ MLAA HLG +N +FQME YVYKRR DG ++INL +TWEKL LAAR +VA
Sbjct: 12 LSQREQDIQMMLAADVHLGTKNCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVA 71
Query: 228 IENPADVFVSHHGP 269
IENP D+ V P
Sbjct: 72 IENPQDIIVQSARP 85
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 534 SIGLMWWLLGT*SVEASWCASPVNQRWDVVVDLFF 638
SIG ++WLL ++ P +WDV+VDLFF
Sbjct: 174 SIGCLFWLLARMVLQMRGTILP-GHKWDVMVDLFF 207
>03_01_0582 -
4318837-4318967,4319219-4319399,4319504-4319701,
4319791-4320053,4320453-4320597
Length = 305
Score = 127 bits (307), Expect = 7e-30
Identities = 59/93 (63%), Positives = 72/93 (77%)
Frame = +2
Query: 236 PR*CVRLSSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 415
P+ + S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGAHAIAGRHTPGTFTNQLQTSFSEPRLLILTDPRTD 134
Query: 416 HQPITEASYVNIPVIALCNTDSPLRFVDIAIHA 514
HQPI E++ NIP IA C+TDSP+R+VDI I A
Sbjct: 135 HQPIKESALGNIPTIAFCDTDSPMRYVDIGIPA 167
Score = 101 bits (241), Expect = 7e-22
Identities = 47/85 (55%), Positives = 59/85 (69%)
Frame = +3
Query: 15 ISATMSGGLDVLALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWE 194
++A G L+ E+DV MLAA HLG +N +FQME YVYKRR+DG ++INL +TWE
Sbjct: 1 MAAVAGGAARALSQAEQDVQMMLAADVHLGTKNCDFQMERYVYKRRSDGIYIINLGKTWE 60
Query: 195 KLVLAARAVVAIENPADVFVSHHGP 269
KL LAAR +VAIENP D+ V P
Sbjct: 61 KLQLAARVIVAIENPQDIIVQSARP 85
Score = 31.9 bits (69), Expect = 0.47
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 534 SIGLMWWLLGT*SVEASWCASPVNQRWDVVVDLFF 638
SIG ++WLL ++ P +WDV+VDLFF
Sbjct: 174 SIGCLFWLLARMVLQMRGTILP-GHKWDVMVDLFF 207
>08_01_0539 +
4679392-4681282,4682060-4682104,4682403-4683560,
4683834-4684204,4684290-4684835,4684927-4685027,
4685117-4685933,4686025-4686213,4686313-4686384,
4686477-4686587,4686647-4686652,4686694-4686794,
4687714-4687813,4687891-4687986,4688157-4688273,
4688367-4688492,4688566-4688619,4688745-4688992,
4689087-4689195,4689284-4689583,4689799-4689963
Length = 2240
Score = 29.9 bits (64), Expect = 1.9
Identities = 13/30 (43%), Positives = 14/30 (46%)
Frame = -2
Query: 660 FSSGSTVRRTNQPQHPSAGSRGKHTTKPQH 571
F +G VRR P G RG HTT H
Sbjct: 19 FRAGGLVRRPGGEAMPDKGERGHHTTSNNH 48
>06_01_0838 -
6360232-6360460,6360571-6360719,6360825-6360933,
6361446-6362276,6362865-6362969,6363084-6363180,
6363303-6363341,6363435-6363477
Length = 533
Score = 29.9 bits (64), Expect = 1.9
Identities = 21/98 (21%), Positives = 44/98 (44%), Gaps = 1/98 (1%)
Frame = -2
Query: 630 NQPQHPSAGSRGKHTTKPQHFTCPTTTTSNQ*KLGRLGVAWIAMSTNLSGESVLHKAITG 451
N PQ P+ G T P + T+ +SN + R + S NL + K ++
Sbjct: 128 NMPQEPADGDEPSPLTPPPSSSTTTSESSNGARTRRRDAVSRSASGNLFFHTPSLKMLSN 187
Query: 450 MLTYEASVMG*WSCAGS-NTIKRRGSRNAA*IWLVKAP 340
+++++ +C+ ++++RR + ++L AP
Sbjct: 188 SYRVDSALVKTCNCSPEHSSVRRRAAEVRESVYLADAP 225
>01_06_0364 -
28749825-28750053,28750442-28750621,28751018-28751147,
28751442-28751756,28752033-28752075,28752108-28752500
Length = 429
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +1
Query: 253 SLITALRSACCTEVCRAHRCYAYCGAFHTRCF 348
+L+ LR T+V RAHRC A T CF
Sbjct: 96 ALLPLLRRRGATDVVRAHRCIPLHPALITSCF 127
>11_06_0458 + 23808402-23808469,23808800-23809684,23810011-23811961,
23812210-23812285,23813064-23813072,23813243-23813335,
23813578-23813581,23813780-23814703,23814926-23815909,
23816073-23816118,23816376-23816951,23817253-23817798,
23817820-23818416
Length = 2252
Score = 28.7 bits (61), Expect = 4.4
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -1
Query: 115 TFSAPRWVVAASILVTSSSLRASTSNP 35
TF A RWV+AA V + L AS S+P
Sbjct: 2100 TFHAHRWVLAARSPVLKAKLSASPSSP 2126
>07_03_0172 +
14697741-14697869,14697878-14697998,14698134-14698226,
14700888-14700946,14701003-14701599,14702813-14703020,
14703102-14703178,14703263-14703302,14703413-14703473,
14704120-14704189,14705014-14705235
Length = 558
Score = 28.7 bits (61), Expect = 4.4
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = -3
Query: 647 PRLEEQINHNIPALVHGGSTPRSLNTSRAQQPPHQ 543
P + ++ NIP + G + PR PPHQ
Sbjct: 155 PAIPATLDENIPRIPDGQNVPRERELRSTPMPPHQ 189
>10_08_0262 +
16307003-16308416,16309501-16309595,16309954-16309959,
16310567-16310671
Length = 539
Score = 28.3 bits (60), Expect = 5.8
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = -2
Query: 555 TTTSNQ*KLGRLGVAWIAMSTNLSGESVLHKAITG 451
TTT+ + LGRLG+A+ AMS + VL K + G
Sbjct: 392 TTTTTRLPLGRLGMAYPAMSIDDDVIYVLTKPVMG 426
>01_06_0902 +
32853708-32853739,32854787-32855596,32856094-32856157,
32856375-32856446
Length = 325
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +2
Query: 122 PDGDLCLQTTC*WYPCDQLASYLGKTCSGCSCCRSH 229
P +C+ T C C K CS CSC + H
Sbjct: 265 PQNSVCMVTLCTSEICSGRRYAAKKLCSACSCHKRH 300
>01_06_0575 -
30357556-30357582,30357698-30357944,30358039-30358161,
30358275-30358301,30358475-30358633,30359764-30359948,
30360225-30360293,30360432-30362354,30363018-30363339,
30363506-30363543
Length = 1039
Score = 27.9 bits (59), Expect = 7.6
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 158 WYPCDQLASYLGKTCSGCSCCRSHREP 238
++PC +GKT S C + HR P
Sbjct: 615 YHPCQPTVRLMGKTVSVCERSKEHRVP 641
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,441,684
Number of Sequences: 37544
Number of extensions: 516666
Number of successful extensions: 1310
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1310
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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