Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30556
         (664 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    22   6.0  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    22   6.0  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    22   6.0  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   6.0  

>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 6/30 (20%), Positives = 16/30 (53%)
 Frame = +2

Query: 395 VLDPAQDHQPITEASYVNIPVIALCNTDSP 484
           ++DP ++++   E   + IP++   +   P
Sbjct: 167 IVDPVEENETYDEFDTIRIPIVRSLSKSPP 196


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -2

Query: 657  SSGSTVRRTNQPQHPSAGSRGKHTTKPQHFTCPTTTTSNQ*KLGRL 520
            S  S  R+  + Q P      +  + P   T   T +SNQ   G+L
Sbjct: 1763 SVSSRRRQQRKQQTPGDVESDESESDPDQLTSSRTESSNQLDAGKL 1808


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 13/46 (28%), Positives = 19/46 (41%)
 Frame = -2

Query: 657  SSGSTVRRTNQPQHPSAGSRGKHTTKPQHFTCPTTTTSNQ*KLGRL 520
            S  S  R+  + Q P      +  + P   T   T +SNQ   G+L
Sbjct: 1759 SVSSRRRQQRKQQTPGDVESDESESDPDQLTSSRTESSNQLDAGKL 1804


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 630 NQPQHPSAGSRGKHTTKPQHFTCPTTTTS 544
           ++P HP A S    T+ P   T  TTTT+
Sbjct: 91  SRPLHPPASS----TSLPATITTTTTTTT 115


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,709
Number of Sequences: 438
Number of extensions: 4994
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19977660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)