Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30556
(664 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identi... 130 1e-30
At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identi... 124 4e-29
At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identi... 124 4e-29
At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RP... 33 0.17
At2g22340.1 68415.m02651 hypothetical protein 33 0.22
At2g07020.1 68415.m00803 protein kinase family protein contains ... 30 1.6
At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase ... 29 3.6
At2g41830.1 68415.m05169 cyclin-related contains Pfam profile PF... 27 8.4
>At1g72370.1 68414.m08371 40S ribosomal protein SA (RPSaA) identical
to laminin receptor-like protein GB:U01955 [Arabidopsis
thaliana]; identical to cDNA laminin receptor homologue
GI:16379
Length = 298
Score = 130 bits (313), Expect = 1e-30
Identities = 60/93 (64%), Positives = 72/93 (77%)
Frame = +2
Query: 236 PR*CVRLSSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 415
P+ + S+RP+GQRAVLKFA +TGA IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 75 PQDIIVQSARPYGQRAVLKFAQYTGANAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 134
Query: 416 HQPITEASYVNIPVIALCNTDSPLRFVDIAIHA 514
HQPI E + NIP+IA C+TDSP+RFVDI I A
Sbjct: 135 HQPIKEGALGNIPIIAFCDTDSPMRFVDIGIPA 167
Score = 91.1 bits (216), Expect = 6e-19
Identities = 41/74 (55%), Positives = 51/74 (68%)
Frame = +3
Query: 48 LALNEEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVA 227
L+ E DV M AA HLG +N N+QME YV+KRR DG ++ NL +TWEKL +AAR +VA
Sbjct: 12 LSQKEADVRMMCAAEVHLGTKNCNYQMERYVFKRRNDGIYIFNLGKTWEKLQMAARVIVA 71
Query: 228 IENPADVFVSHHGP 269
IENP D+ V P
Sbjct: 72 IENPQDIIVQSARP 85
Score = 32.3 bits (70), Expect = 0.30
Identities = 15/35 (42%), Positives = 22/35 (62%)
Frame = +3
Query: 534 SIGLMWWLLGT*SVEASWCASPVNQRWDVVVDLFF 638
SIG ++WLL ++ + Q+WDV+VDLFF
Sbjct: 174 SIGCLFWLLARMVLQMRGTIA-AGQKWDVMVDLFF 207
>At3g04770.2 68416.m00514 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 280
Score = 124 bits (300), Expect = 4e-29
Identities = 58/93 (62%), Positives = 69/93 (74%)
Frame = +2
Query: 236 PR*CVRLSSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 415
P+ + S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 416 HQPITEASYVNIPVIALCNTDSPLRFVDIAIHA 514
HQPI E + NIP IA C+TDSP+ FVDI I A
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPA 168
Score = 90.6 bits (215), Expect = 8e-19
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +3
Query: 60 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 239
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 240 ADVFVSHHGP 269
D+ V P
Sbjct: 77 KDIIVQSARP 86
Score = 30.7 bits (66), Expect = 0.90
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +3
Query: 534 SIGLMWWLLGT*SVEASWCASPVNQRWDVVVDLFF 638
SIG ++WLL ++ Q+WDV+VDLFF
Sbjct: 175 SIGCLFWLLARMVLQMRGTILAA-QKWDVMVDLFF 208
>At3g04770.1 68416.m00513 40S ribosomal protein SA (RPSaB) identical
to p40 protein homolog GB:AAB67866 [Arabidopsis
thaliana]; similar to 40S ribosomal protein SA (P40)
GB:O65751 [Cicer arietinum]
Length = 332
Score = 124 bits (300), Expect = 4e-29
Identities = 58/93 (62%), Positives = 69/93 (74%)
Frame = +2
Query: 236 PR*CVRLSSRPFGQRAVLKFAAHTGATPIAGRFTPGAFTNQIQAAFREPRLLIVLDPAQD 415
P+ + S+RP+GQRAVLKFA +TG IAGR TPG FTNQ+Q +F EPRLLI+ DP D
Sbjct: 76 PKDIIVQSARPYGQRAVLKFAQYTGVNAIAGRHTPGTFTNQMQTSFSEPRLLILTDPRTD 135
Query: 416 HQPITEASYVNIPVIALCNTDSPLRFVDIAIHA 514
HQPI E + NIP IA C+TDSP+ FVDI I A
Sbjct: 136 HQPIKEGALGNIPTIAFCDTDSPMGFVDIGIPA 168
Score = 90.6 bits (215), Expect = 8e-19
Identities = 39/70 (55%), Positives = 51/70 (72%)
Frame = +3
Query: 60 EEDVTKMLAATTHLGAENVNFQMETYVYKRRADGTHVINLRRTWEKLVLAARAVVAIENP 239
E D+ ML+A HLG +N N+QME YV+KRR DG ++INL +TW+KL +AAR +VAIENP
Sbjct: 17 EADIQMMLSADVHLGTKNCNYQMERYVFKRRDDGIYIINLGKTWDKLQMAARVIVAIENP 76
Query: 240 ADVFVSHHGP 269
D+ V P
Sbjct: 77 KDIIVQSARP 86
>At3g03600.1 68416.m00363 ribosomal protein S2, mitochondrial (RPS2)
identical to SP|Q9GCB9 Mitochondrial ribosomal protein
S2 {Arabidopsis thaliana}; contains Pfam profile
PF00318: ribosomal protein S2
Length = 219
Score = 33.1 bits (72), Expect = 0.17
Identities = 15/48 (31%), Positives = 26/48 (54%)
Frame = +2
Query: 380 PRLLIVLDPAQDHQPITEASYVNIPVIALCNTDSPLRFVDIAIHATPS 523
P ++V D + I EAS + IPV+A+ + + PL F + + P+
Sbjct: 131 PDCVVVFDSERKSSVILEASKLQIPVVAIVDPNVPLEFFEKITYPVPA 178
>At2g22340.1 68415.m02651 hypothetical protein
Length = 358
Score = 32.7 bits (71), Expect = 0.22
Identities = 13/40 (32%), Positives = 19/40 (47%)
Frame = +2
Query: 98 SWGRKC*LPDGDLCLQTTC*WYPCDQLASYLGKTCSGCSC 217
SW LP+GD +Q C WY + S +G+ + C
Sbjct: 188 SWTEASLLPEGDCFIQLNCLWYKPKEDTSVMGRKMASSDC 227
>At2g07020.1 68415.m00803 protein kinase family protein contains
protein kinase domain, Pfam:PF00069
Length = 700
Score = 29.9 bits (64), Expect = 1.6
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = +2
Query: 335 TPGAFTNQIQAAFREPRLLIVLDPAQDHQPITEA 436
TP TNQ++ A E +LDP PI EA
Sbjct: 620 TPMGLTNQVEKAIEEGNFAKILDPLVTDWPIEEA 653
>At4g22930.1 68417.m03311 dihydroorotase, mitochondrial / DHOase
(PYR4) identical to SP|O04904 Dihydroorotase,
mitochondrial precursor (EC 3.5.2.3) (DHOase)
{Arabidopsis thaliana}
Length = 377
Score = 28.7 bits (61), Expect = 3.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 647 PRLEEQINHNIPALVHGGSTPRSLN 573
P LEE + N+P LVHG T S++
Sbjct: 153 PVLEEMVKQNMPLLVHGEVTDPSID 177
>At2g41830.1 68415.m05169 cyclin-related contains Pfam profile
PF02984: Cyclin, C-terminal domain
Length = 1025
Score = 27.5 bits (58), Expect = 8.4
Identities = 18/55 (32%), Positives = 32/55 (58%)
Frame = -3
Query: 287 VQHADRRAVMRDEHISGVLDGYDSTSSQNKFFPGTTQVDHMGTISTSFVDIGLHL 123
++H D ++V++ H S L+ + TSS ++ T +V+H TI ++ DI HL
Sbjct: 349 IKHLDHKSVLK--HPSMQLNILEVTSSLSE----TAKVEHSATIVSAISDIMRHL 397
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,638,313
Number of Sequences: 28952
Number of extensions: 387911
Number of successful extensions: 960
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 927
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 958
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1393347168
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -