Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30555
         (707 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces pombe...    27   2.0  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    26   4.6  

>SPAC17A5.15c |||glutamate-tRNA ligase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 716

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
 Frame = +3

Query: 219 PIRQSCRCRPGRKV-EEYDAHPQYSFAYDVQDSLTG 323
           P+   C   P  +   +Y A+P Y FA  + DSL G
Sbjct: 363 PVIYRCNLLPHHRTGTKYRAYPTYDFACPIVDSLEG 398


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 19/59 (32%), Positives = 31/59 (52%), Gaps = 2/59 (3%)
 Frame = +3

Query: 267 YDAHPQYSFAYDVQDSLTGDSKT--QHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHN 437
           Y  + QY+   D++D  T D  T  +HE  D +V +   S+   +GT  TV+ T++  N
Sbjct: 206 YITNSQYNDTLDMEDQ-TSDLITTFEHENEDHEVHEVP-SIHGMEGTFETVNLTSEAGN 262


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,972,944
Number of Sequences: 5004
Number of extensions: 30894
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 329179816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)