Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdS30555
         (707 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_1138 - 26397585-26398682                                         28   6.3  
01_06_0430 + 29299970-29300031,29300162-29300294,29301057-293011...    28   8.4  

>12_02_1138 - 26397585-26398682
          Length = 365

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 321 QLDCLARRKRSCTEDERRIPRLCDRGD 241
           +L CL +RK SC  +E   P L D  D
Sbjct: 267 KLPCLTKRKDSCYPEEHYFPTLLDMQD 293


>01_06_0430 +
           29299970-29300031,29300162-29300294,29301057-29301160,
           29302201-29302372,29302488-29302628,29302707-29303055,
           29303133-29305477
          Length = 1101

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 2/56 (3%)
 Frame = +3

Query: 288 SFAYDVQDSLTG--DSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPHNGFNA 449
           S  +D Q+   G   S    +  D DV  G  +++DP  +K T + T + H GF++
Sbjct: 558 STIWDSQNDKAGPDSSAVVFDQYDSDV--GEENLLDPFSSKHTEEPTVEDHKGFSS 611


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,617,712
Number of Sequences: 37544
Number of extensions: 245668
Number of successful extensions: 797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 762
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)