Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdS30555
(707 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.2
SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0) 30 2.1
SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009) 29 3.7
SB_50069| Best HMM Match : tRNA-synt_1c (HMM E-Value=3e-31) 29 3.7
SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1) 28 8.5
SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27) 28 8.5
SB_23318| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.5
>SB_30500| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2014
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = +3
Query: 366 QGSYSVVDPDGTKRTVDYTADPHNGFNAVVHKEP 467
+GSY D DG +RT++Y + G+ H P
Sbjct: 1742 KGSYDTHDVDGRRRTIEYYSGTPQGYLPPAHTRP 1775
>SB_20844| Best HMM Match : Ion_trans (HMM E-Value=0)
Length = 2675
Score = 29.9 bits (64), Expect = 2.1
Identities = 18/80 (22%), Positives = 29/80 (36%)
Frame = +3
Query: 237 RCRPGRKVEEYDAHPQYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVD 416
R R ++Y + + + Y ++ D T HE D D + + D T D
Sbjct: 565 RATDNRASDDYTTNDEEANNYKTNNNAPDDDTTNHEATDNDAPDHNTTYYDTPDDYTTND 624
Query: 417 YTADPHNGFNAVVHKEPLAH 476
AD + N + E H
Sbjct: 625 EEADNYKTNNDTTNHEAPHH 644
>SB_48656| Best HMM Match : Extensin_2 (HMM E-Value=0.0009)
Length = 392
Score = 29.1 bits (62), Expect = 3.7
Identities = 17/46 (36%), Positives = 21/46 (45%)
Frame = -2
Query: 178 PEQHVPREQLHMRLEQDVRCMPQEQSLLEQSQMRRPGQRA*RPLLQ 41
P+Q P Q L Q +PQ+Q+ L Q Q P Q A P Q
Sbjct: 198 PKQQAPLPQQQAPLPQQQAPLPQQQAPLPQQQAPLPQQHAPLPQQQ 243
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = -2
Query: 178 PEQHVPREQLHMRLEQDVRCMPQEQSLLEQSQMRRPGQRA*RP 50
P+Q P Q L Q +PQ+ + L Q Q P Q+A P
Sbjct: 212 PQQQAPLPQQQAPLPQQQAPLPQQHAPLPQQQAPLPQQKAPLP 254
>SB_50069| Best HMM Match : tRNA-synt_1c (HMM E-Value=3e-31)
Length = 210
Score = 29.1 bits (62), Expect = 3.7
Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 3/81 (3%)
Frame = +3
Query: 237 RCRPGRKVE---EYDAHPQYSFAYDVQDSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKR 407
RC+P + +Y +P Y FA + DSL G + T D Y ++D G ++
Sbjct: 33 RCKPETHIRTGNKYKVYPIYDFACPIVDSLEGVTHALRTTEYHDRDPQYYWLLDALGLRK 92
Query: 408 TVDYTADPHNGFNAVVHKEPL 470
Y N V+ K L
Sbjct: 93 PHIYEFSRLTLQNTVMSKRKL 113
>SB_56336| Best HMM Match : Ag332 (HMM E-Value=5.1)
Length = 366
Score = 27.9 bits (59), Expect = 8.5
Identities = 15/59 (25%), Positives = 29/59 (49%)
Frame = -2
Query: 247 GRQRQLWRMGRRTLRD*RV*DEQPEQHVPREQLHMRLEQDVRCMPQEQSLLEQSQMRRP 71
G + + R RR + + +E+P+Q P E+ + E D + QE+ + E+ + P
Sbjct: 206 GEEPKTRRTSRRRTKQEEIVEEEPKQEGPVEEETRQEEPDEKEREQEELVEEEPKKEEP 264
>SB_19608| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 426
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 309 DSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH-NGFNAVVHKEPL 470
DS++ ++ H + D DV S+V PD DY + + + ++ V+ +P+
Sbjct: 229 DSVSKNNIPPHISEDADVASQVISLVSPDSMIEEGDYVLEAYTDSYDDVIIDQPI 283
>SB_11123| Best HMM Match : RVT_1 (HMM E-Value=3.4e-27)
Length = 1154
Score = 27.9 bits (59), Expect = 8.5
Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 3/50 (6%)
Frame = +3
Query: 300 DVQDSLTGDSKTQHE---TRDGDVVQGSYSVVDPDGTKRTVDYTADPHNG 440
DV+D K++ E +DG +++G+ VV P G KR ++ + H G
Sbjct: 664 DVKDPELLPYKSKREELSVQDGCILRGARVVVPPQGRKRVLEDLHEAHPG 713
>SB_23318| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 500
Score = 27.9 bits (59), Expect = 8.5
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -3
Query: 147 ICDWSRMCGVCRRNKACSNSRKCADQDSELE 55
+C W +MCG +R++ C + +C D E +
Sbjct: 171 MCGWEQMCGWEQRSR-CLDGSRCVDGSREAD 200
>SB_2648| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 299
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Frame = +3
Query: 309 DSLTGDSKTQHETRDGDVVQGSYSVVDPDGTKRTVDYTADPH-NGFNAVVHKEPL 470
DS++ ++ H + D DV S+V PD DY + + + ++ V+ +P+
Sbjct: 102 DSVSKNNIPPHISEDADVASQVISLVSPDSMIEEGDYVLEAYTDSYDDVIIDQPI 156
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,497,408
Number of Sequences: 59808
Number of extensions: 266908
Number of successful extensions: 1047
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1042
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1865706635
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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